Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3170

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2174 to 3237 11538 mRNA_3171: 11539 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 4085 to 5766 11539

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,174 - 11537 mRNA_3169 0.65 -1.0
1,174 + 11537 mRNA_3169 0.65 1.7
1,259 + 11537 mRNA_3169 0.73 2.4
1,265 + 11537 mRNA_3169 0.74 0.4
1,268 + 11537 mRNA_3169 0.74 -0.1
1,269 - 11537 mRNA_3169 0.74 -0.6
1,288 - 11537 mRNA_3169 0.76 -0.2
1,297 + 11537 mRNA_3169 0.77 -2.3
1,303 - 11537 mRNA_3169 0.78 0.1
1,399 + 11537 mRNA_3169 0.87 0.1
1,412 - 11537 mRNA_3169 0.88 -1.6
1,419 - 11537 mRNA_3169 0.89 0.1
1,423 - 11537 mRNA_3169 0.90 -2.1
1,429 - 0.6
1,453 + 0.0
1,459 + 0.5
1,459 + -0.7
1,460 - -1.0
1,461 + -1.4
1,462 + 0.6
1,467 + 0.8
1,470 - -0.7
1,474 - -0.5
1,485 + 0.9
1,520 + -0.8
1,523 + 1.0
1,531 - 1.3
1,537 + -0.4
1,541 + 1.6
1,562 + 1.1
1,567 + 0.8
1,572 + -0.3
1,582 - -0.6
1,584 - 0.5
1,589 + -1.2
1,596 - -0.3
1,601 - -0.2
1,602 + -0.7
1,605 + -0.1
1,609 + 0.7
1,616 + -2.0
1,636 + 1.1
1,654 + 1.4
1,656 - 1.5
1,666 + 0.4
1,675 - 0.0
1,682 - 2.7
1,697 - -0.3
1,709 + -0.3
1,709 - -0.3
1,711 + 0.3
1,718 - -0.3
1,719 + -0.6
1,722 - -0.4
1,723 + 0.0
1,725 - 0.0
1,725 - -0.2
1,727 + 0.1
1,730 + -0.5
1,731 + 0.1
1,732 + 1.8
1,732 + 0.4
1,734 + -2.7
1,734 + -1.2
1,734 + -0.3
1,739 - -0.1
1,740 + 1.2
1,744 - -1.3
1,747 + -0.9
1,749 + -0.8
1,759 + -0.5
1,759 + 0.0
1,759 + 1.4
1,761 + 1.3
1,763 + -1.0
1,765 + -0.7
1,767 + 1.7
1,769 + -0.8
1,772 + 0.7
1,772 + -1.0
1,774 + -1.3
1,774 + -0.5
1,775 + -2.0
1,776 - 0.5
1,776 + -0.6
1,777 + 0.7
1,778 + 1.2
1,778 - 0.6
1,781 - 1.0
1,783 - 1.0
1,783 - 0.7
1,783 - -0.1
1,783 - -0.6
1,784 + 1.1
1,789 + 1.3
1,789 - -0.1
1,791 + 0.3
1,792 + -0.5
1,793 + 1.8
1,795 + -0.9
1,796 + 0.1
1,796 - -0.3
1,798 + -0.9
1,800 + -0.2
1,801 + 0.2
1,805 + 0.1
1,805 + -1.1
1,807 + 0.5
1,813 - -0.1
1,814 + 0.1
1,814 + 0.6
1,818 - -0.0
1,851 - 0.3
1,874 + 0.7
1,881 - -0.1
1,885 - -0.3
1,891 - -2.3
1,896 - 0.7
1,912 + 1.1
1,912 + 1.0
1,914 - -0.6
1,916 - -1.5
1,917 - 0.1
1,919 + 0.9
1,922 - 1.8
1,923 - -0.6
1,934 - 0.9
1,935 + -0.7
1,938 - -0.2
1,938 - -0.1
1,940 - 0.2
1,941 + 0.6
1,941 + 0.2
1,942 + -1.5
1,943 - -1.0
1,944 + 0.6
1,944 - -0.2
1,945 - 0.8
1,945 + -0.1
1,946 - -0.4
1,947 + 1.2
1,960 - -0.3
1,968 + -1.2
1,980 + 0.7
2,015 + -1.5
2,067 - 1.5
2,081 - -0.5
2,091 + 1.5
2,220 + -0.7
2,229 - 1.9
2,235 - 0.5
2,237 - 1.5
2,242 + -2.1
2,242 - 0.2
2,245 - 2.2
2,248 - 0.7
2,251 + 2.8
2,254 - -0.2
2,261 + 0.2
2,262 - -1.9
2,266 + 1.2
2,268 + -0.5
2,400 + 11538 mRNA_3170 0.21 -0.5
2,401 - 11538 mRNA_3170 0.21 0.1
2,404 + 11538 mRNA_3170 0.22 -1.6
2,414 + 11538 mRNA_3170 0.23 1.8
2,420 - 11538 mRNA_3170 0.23 2.1
2,439 + 11538 mRNA_3170 0.25 1.4
2,446 + 11538 mRNA_3170 0.26 2.7
2,470 - 11538 mRNA_3170 0.28 -0.2
2,516 - 11538 mRNA_3170 0.32 -0.2
2,550 - 11538 mRNA_3170 0.35 -0.6
2,553 + 11538 mRNA_3170 0.36 0.2
2,569 + 11538 mRNA_3170 0.37 0.4
2,573 - 11538 mRNA_3170 0.38 0.8
2,581 + 11538 mRNA_3170 0.38 3.1
2,582 + 11538 mRNA_3170 0.38 1.5
2,611 + 11538 mRNA_3170 0.41 1.0
2,698 + 11538 mRNA_3170 0.49 -1.3
2,699 + 11538 mRNA_3170 0.49 1.3
2,755 + 11538 mRNA_3170 0.55 1.4
2,853 + 11538 mRNA_3170 0.64 -0.8
3,014 - 11538 mRNA_3170 0.79 0.1
3,407 - 0.6
3,547 - 0.2
3,604 + -0.0
3,607 + 0.1
3,739 - -2.3
3,768 + -0.2
4,061 + 1.5
4,136 - -0.5
4,162 + -0.4
4,176 + -1.6