Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3134

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3133: 11501 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 395348 to 397742 11501 mRNA_3134: 11502 - K17278 PGRMC1_2 membrane-associated progesterone receptor component, at 397818 to 398852 11502 mRNA_3135: 11503 - HMMPfam-Alpha/beta hydrolase family-PF12695,SUPERFAMILY--SSF53474, at 399522 to 400301 11503

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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396,838 + 11501 mRNA_3133 0.62 0.1
396,842 + 11501 mRNA_3133 0.62 -0.9
397,047 - 11501 mRNA_3133 0.71 0.6
397,287 + 11501 mRNA_3133 0.81 1.7
397,432 - 11501 mRNA_3133 0.87 0.5
397,708 + 1.4
397,715 - 0.0
397,869 - 1.8
397,888 + -2.0
398,054 - 11502 mRNA_3134 0.23 0.1
398,140 - 11502 mRNA_3134 0.31 -0.7
398,273 + 11502 mRNA_3134 0.44 -0.5
398,295 - 11502 mRNA_3134 0.46 -1.6
398,296 + 11502 mRNA_3134 0.46 0.8
398,306 + 11502 mRNA_3134 0.47 0.1
398,456 + 11502 mRNA_3134 0.62 -1.2
398,594 + 11502 mRNA_3134 0.75 -0.5
398,598 + 11502 mRNA_3134 0.75 1.1
398,601 + 11502 mRNA_3134 0.76 -0.1
398,606 - 11502 mRNA_3134 0.76 1.0
398,607 + 11502 mRNA_3134 0.76 0.8
398,607 + 11502 mRNA_3134 0.76 -1.0
398,729 - 11502 mRNA_3134 0.88 0.0
398,734 - 11502 mRNA_3134 0.89 -0.7
398,749 - 0.7
398,760 + -0.9
398,760 - 1.5
398,774 - 0.3
398,843 - 0.9
398,879 + -0.1
398,889 - -1.2
398,897 + 0.6
398,907 + 1.2
398,910 + 1.5
398,913 + 0.0
398,942 + -1.4
399,008 - -0.2
399,042 - -1.1
399,043 + 0.3
399,057 + 0.1
399,065 + 0.4
399,083 - 1.0
399,160 - -0.0
399,191 - 2.2
399,230 + 0.0
399,268 - 0.4
399,324 + 1.2
399,365 + 0.4
399,370 + -2.1
399,475 - -0.4
399,663 - 11503 mRNA_3135 0.18 0.9
399,730 - 11503 mRNA_3135 0.27 2.5