Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3116

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3115: 11483 - Hypothetical Protein, at 356182 to 356910 11483 mRNA_3116: 11484 - BLAST Pogo transposable element [Larimichthys crocea], at 356999 to 357616 11484 mRNA_3117: 11485 - KOG1110 Putative steroid membrane receptor Hpr6.6/25-Dx, at 357751 to 358834 11485

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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356,010 + -0.3
356,111 - -2.9
356,130 + -0.4
356,131 + 2.1
356,259 - 11483 mRNA_3115 0.11 -1.1
356,262 - 11483 mRNA_3115 0.11 -1.8
356,282 - 11483 mRNA_3115 0.14 -0.4
356,358 - 11483 mRNA_3115 0.24 1.4
356,415 + 11483 mRNA_3115 0.32 1.2
356,571 + 11483 mRNA_3115 0.53 0.2
356,577 + 11483 mRNA_3115 0.54 0.8
356,579 + 11483 mRNA_3115 0.54 0.5
356,732 - 11483 mRNA_3115 0.75 0.6
356,839 - -0.4
356,990 - -1.9
357,161 + 11484 mRNA_3116 0.26 0.0
357,164 - 11484 mRNA_3116 0.27 0.4
357,196 + 11484 mRNA_3116 0.32 2.3
357,287 - 11484 mRNA_3116 0.47 -1.0
357,305 + 11484 mRNA_3116 0.50 2.0
357,306 + 11484 mRNA_3116 0.50 -0.5
357,356 - 11484 mRNA_3116 0.58 -4.1
357,426 + 11484 mRNA_3116 0.69 0.1
357,578 - 0.2
357,582 - 0.5
357,604 - -0.5
357,610 - -0.0
357,643 - -0.2
357,705 + -1.6
357,757 + 0.6
358,047 + 11485 mRNA_3117 0.27 -0.5
358,058 - 11485 mRNA_3117 0.28 0.1
358,077 - 11485 mRNA_3117 0.30 1.5
358,107 - 11485 mRNA_3117 0.33 -1.9
358,368 - 11485 mRNA_3117 0.57 1.4
358,471 - 11485 mRNA_3117 0.66 0.3
358,472 + 11485 mRNA_3117 0.67 0.3
358,614 + 11485 mRNA_3117 0.80 -0.5