Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3082

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3081: 11449 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 274779 to 278054 11449 mRNA_3082: 11450 - K09510 DNAJB4 DnaJ homolog subfamily B member 4, at 278441 to 278932 11450

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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277,595 + 11449 mRNA_3081 0.86 1.1
277,644 + 11449 mRNA_3081 0.87 0.2
277,673 + 11449 mRNA_3081 0.88 0.3
277,681 - 11449 mRNA_3081 0.89 1.3
277,797 + 0.4
277,797 - -0.3
277,824 + 0.5
277,835 - 2.1
277,836 + -1.6
277,842 + -2.4
277,933 - 0.6
277,960 - -2.1
277,981 + -0.3
277,985 + 2.1
278,083 - 0.4
278,105 - 2.0
278,108 + 2.0
278,135 - 0.7
278,138 + 1.4
278,246 - -0.8
278,263 - -2.3
278,264 - -1.6
278,293 + -2.0
278,402 + -0.5
278,557 - 11450 mRNA_3082 0.24 0.9
278,558 - 11450 mRNA_3082 0.24 -1.2
278,565 + 11450 mRNA_3082 0.25 -0.0
278,568 - 11450 mRNA_3082 0.26 0.5
278,704 + 11450 mRNA_3082 0.53 0.8
278,871 + 11450 mRNA_3082 0.87 0.2
278,986 - 1.2
278,990 - -0.6
279,127 - 0.5
279,146 + -0.3
279,147 + 0.4
279,149 + 1.6
279,160 + -1.0
279,335 + 1.3
279,423 + -0.6
279,427 + 0.4
279,433 - 1.1
279,447 - -0.8
279,452 + 2.2
279,458 + 0.5
279,482 + 1.5
279,566 - -0.7
279,570 + -0.5
279,573 + -1.6
279,577 + -0.0
279,579 - 0.8
279,596 - -0.5
279,600 + -0.4
279,611 + -0.3
279,629 + 0.6
279,696 + -0.1
279,703 + 2.8
279,735 + 0.3
279,741 + -0.0
279,749 - -0.6
279,754 - 0.8
279,756 - -0.1
279,768 - 0.1
279,786 - 0.6
279,837 + 0.3
279,847 - 0.2
279,853 - -1.0
279,870 - 0.6
279,874 - 0.7
279,874 - -0.3
279,877 + 0.3
279,881 - 1.6
279,892 + -0.1
279,894 + 0.4
279,896 - -1.5
279,904 + -0.3