Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3079

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3078: 11446 - K01613 psd, PISD phosphatidylserine decarboxylase, at 265905 to 270528 11446 mRNA_3079: 11447 - HMMPfam-DNA polymerase Ligase (LigD)-PF13298, at 270913 to 272289 11447 mRNA_3080: 11448 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 272562 to 274087 11448

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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269,922 - 11446 mRNA_3078 0.87 -0.7
269,924 - 11446 mRNA_3078 0.87 -0.8
269,982 + 11446 mRNA_3078 0.88 -0.5
270,119 + 1.0
270,132 - -0.2
270,172 - -0.1
270,278 + 0.4
270,280 + 0.9
270,282 - 1.7
270,407 - 0.2
270,407 - 0.4
270,407 - -0.4
270,415 - 0.5
270,538 + -1.2
270,558 + -0.4
270,569 - 0.5
270,578 + -0.8
270,579 + -0.0
270,700 - 0.3
270,701 - 0.4
270,701 - 0.2
270,711 + -0.6
270,717 + -0.6
270,721 - -2.1
270,728 - 0.8
270,732 + 0.1
270,857 - 0.9
270,859 - -1.0
270,890 + 0.2
271,039 - 2.3
271,163 - 11447 mRNA_3079 0.18 0.3
271,182 - 11447 mRNA_3079 0.20 0.3
271,327 + 11447 mRNA_3079 0.30 1.9
271,423 - 11447 mRNA_3079 0.37 -0.0
271,488 + 11447 mRNA_3079 0.42 -2.0
271,602 - 11447 mRNA_3079 0.50 -0.6
271,625 + 11447 mRNA_3079 0.52 -0.3
271,650 - 11447 mRNA_3079 0.54 -0.4
271,669 - 11447 mRNA_3079 0.55 1.5
271,710 - 11447 mRNA_3079 0.58 -0.3
271,710 - 11447 mRNA_3079 0.58 -0.1
271,757 - 11447 mRNA_3079 0.61 0.3
271,906 + 11447 mRNA_3079 0.72 -0.4
271,953 + 11447 mRNA_3079 0.76 0.6
272,120 - 11447 mRNA_3079 0.88 -0.1
272,174 + 0.9
272,189 + -1.4
272,331 + -0.5
272,339 + 0.3
272,466 - -1.4
272,493 - 1.3
272,581 + -1.9
272,620 - 1.0
272,903 - 11448 mRNA_3080 0.22 1.9
273,232 - 11448 mRNA_3080 0.44 0.5