Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3055

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3054: 11422 - Hypothetical Protein, at 207270 to 207722 11422 mRNA_3055: 11423 - Hypothetical Protein, at 208583 to 210185 11423 mRNA_3056: 11424 - K11290 SET, TAF1, I2PP2A template-activating factor I, at 210409 to 211861 11424

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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207,643 - 11422 mRNA_3054 0.82 0.4
207,643 - 11422 mRNA_3054 0.82 0.6
207,818 + 0.8
207,925 + -0.4
207,955 - -1.0
208,071 - -1.4
208,092 - 1.4
208,096 + -1.6
208,099 - -0.7
208,100 - 0.1
208,101 + 0.6
208,103 + -0.9
208,108 - -0.4
208,108 + -0.3
208,108 + -0.9
208,112 - -0.5
208,118 + 0.1
208,123 - 2.6
208,124 + -0.2
208,155 - -1.6
208,223 + -0.4
208,228 - 1.0
208,229 + 3.1
208,239 - -0.9
208,248 + -0.4
208,253 + -1.6
208,259 - -0.3
208,392 - 1.1
208,397 - -2.4
208,400 - -0.7
208,414 + -1.3
208,420 + 1.7
208,523 + -1.2
208,561 - 1.6
208,653 + 0.6
208,681 + 1.2
208,689 + -0.1
208,806 - 11423 mRNA_3055 0.14 -0.5
208,834 - 11423 mRNA_3055 0.16 -1.9
208,839 + 11423 mRNA_3055 0.16 -1.4
208,976 - 11423 mRNA_3055 0.25 -3.0
209,004 + 11423 mRNA_3055 0.26 0.4
209,114 + 11423 mRNA_3055 0.33 -0.3
209,404 - 11423 mRNA_3055 0.51 -0.2
209,458 - 11423 mRNA_3055 0.55 -0.4
209,611 - 11423 mRNA_3055 0.64 0.6
209,839 + 11423 mRNA_3055 0.78 -0.0
209,847 + 11423 mRNA_3055 0.79 0.1
210,000 - 11423 mRNA_3055 0.88 -1.3
210,001 + 11423 mRNA_3055 0.88 -1.3
210,018 + 11423 mRNA_3055 0.90 -0.8
210,149 + -1.1
210,189 - -0.2
210,307 - -1.3
210,320 + 0.3
210,333 + -1.4
210,347 + 2.6
210,410 + -0.1
210,500 + 1.0
210,618 + 11424 mRNA_3056 0.14 0.4
210,739 + 11424 mRNA_3056 0.23 1.6
210,743 - 11424 mRNA_3056 0.23 0.3
210,774 - 11424 mRNA_3056 0.25 0.5
210,913 - 11424 mRNA_3056 0.35 1.6
210,984 + 11424 mRNA_3056 0.40 0.3
211,027 + 11424 mRNA_3056 0.43 -0.9
211,181 + 11424 mRNA_3056 0.53 -1.0