Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3021

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3020: 11388 - Hypothetical Protein, at 114693 to 115018 11388 mRNA_3021: 11389 - K00697 otsA trehalose 6-phosphate synthase, at 115343 to 117642 11389 mRNA_3022: 11390 - K12394 AP1S1_2 AP-1 complex subunit sigma 1/2, at 117998 to 118989 11390

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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115,013 + 1.7
115,017 + -0.8
115,071 - -0.7
115,084 + 0.6
115,100 + -1.4
115,101 + 0.9
115,371 + 0.4
116,297 - 11389 mRNA_3021 0.41 -0.2
116,827 - 11389 mRNA_3021 0.65 -2.0
117,458 + -3.0
117,604 - -0.1
117,607 + -1.8
117,612 - -1.4
117,750 - 0.8
117,755 + 0.0
117,758 - 0.4
117,763 - -0.0
117,763 - -0.2
117,763 - -1.3
117,769 - 0.3
117,783 - -0.8
117,793 - 0.5
117,793 - -0.8
117,794 + -0.8
117,794 + 0.8
117,794 + -1.3
117,796 + 0.3
117,797 - -2.4
117,797 + 0.2
117,797 - 0.4
117,800 - -0.2
117,801 + -0.2
117,804 + 0.6
117,914 - -1.0
117,916 - -0.1
117,922 - -0.3
117,924 - -0.4
117,925 + -0.4
117,947 - -0.3
117,948 + -0.1
117,953 - -1.2
117,954 - -1.8
117,957 - -2.6
118,244 - 11390 mRNA_3022 0.25 0.3