Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2994

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2993: 11361 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 29624 to 29993 11361 mRNA_2994: 11362 - K14729 FOX2 multifunctional beta-oxidation protein, at 30118 to 34295 11362 mRNA_2995: 11363 - K20290 COG3, SEC34 conserved oligomeric Golgi complex subunit 3, at 34550 to 37704 11363

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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29,212 + 0.2
29,317 + 0.1
29,361 - -0.5
29,390 - 0.1
29,393 + -0.3
29,449 + 1.2
29,479 - -1.0
29,490 + 0.6
29,556 - 1.6
29,690 - 11361 mRNA_2993 0.18 -0.2
29,693 - 11361 mRNA_2993 0.19 0.8
29,694 - 11361 mRNA_2993 0.19 -0.6
29,802 + 11361 mRNA_2993 0.48 -1.1
29,967 + 0.9
29,999 + -0.2
30,170 - 0.2
30,250 + -1.4
30,385 + -2.2
30,462 + 0.6
30,476 - -0.0
30,478 + -0.8
30,491 + 1.1
30,494 - 0.5
30,499 - -1.0
30,625 - 11362 mRNA_2994 0.12 -0.4
30,712 + 11362 mRNA_2994 0.14 -0.2
30,839 + 11362 mRNA_2994 0.17 -0.8
30,858 + 11362 mRNA_2994 0.18 1.1
30,956 - 11362 mRNA_2994 0.20 -0.2
31,074 - 11362 mRNA_2994 0.23 -0.3
31,080 + 11362 mRNA_2994 0.23 -0.7
31,080 + 11362 mRNA_2994 0.23 0.2
31,080 + 11362 mRNA_2994 0.23 0.3
31,467 + 11362 mRNA_2994 0.32 -2.3
31,564 + 11362 mRNA_2994 0.35 1.8
31,572 + 11362 mRNA_2994 0.35 0.1
31,580 + 11362 mRNA_2994 0.35 -0.5
31,580 + 11362 mRNA_2994 0.35 1.3
31,655 + 11362 mRNA_2994 0.37 -0.2
31,873 + 11362 mRNA_2994 0.42 1.3
31,874 - 11362 mRNA_2994 0.42 -0.9
32,169 - 11362 mRNA_2994 0.49 -0.3
32,169 - 11362 mRNA_2994 0.49 1.5
32,314 - 11362 mRNA_2994 0.53 1.1
32,331 + 11362 mRNA_2994 0.53 -0.5
32,432 - 11362 mRNA_2994 0.55 -0.3
32,596 - 11362 mRNA_2994 0.59 -1.4
32,599 + 11362 mRNA_2994 0.59 -0.6
32,601 - 11362 mRNA_2994 0.59 1.5
32,610 + 11362 mRNA_2994 0.60 -0.2
32,610 + 11362 mRNA_2994 0.60 0.1
32,727 + 11362 mRNA_2994 0.62 0.4
32,873 - 11362 mRNA_2994 0.66 0.6
32,912 + 11362 mRNA_2994 0.67 -0.5
32,985 + 11362 mRNA_2994 0.69 -1.3
33,149 + 11362 mRNA_2994 0.73 1.5
33,237 - 11362 mRNA_2994 0.75 -0.3
33,294 - 11362 mRNA_2994 0.76 0.1
33,306 + 11362 mRNA_2994 0.76 1.6
33,337 + 11362 mRNA_2994 0.77 0.4
33,361 - 11362 mRNA_2994 0.78 -0.7
33,418 + 11362 mRNA_2994 0.79 2.7
33,421 - 11362 mRNA_2994 0.79 -0.7
33,504 - 11362 mRNA_2994 0.81 0.6
33,554 + 11362 mRNA_2994 0.82 0.3
33,814 + 11362 mRNA_2994 0.88 0.5
33,902 - -0.0
34,049 - 0.9
34,167 - -0.1
34,189 + -1.5
34,208 + -1.2
34,212 - -1.2
34,217 + 0.6
34,220 + -0.6
34,352 + -1.4
34,355 - 0.2
34,358 + 3.0
34,364 - 2.2
34,371 - 1.3
34,377 + -0.4
34,384 + 0.8
34,387 - -0.1
34,402 + 0.0
34,408 - -0.9
34,421 + 0.4
34,431 + 0.1
34,648 + 0.9
34,697 + 0.6
34,697 + 0.2
35,117 - 11363 mRNA_2995 0.18 0.3
35,245 - 11363 mRNA_2995 0.22 0.1
35,247 - 11363 mRNA_2995 0.22 -1.7