Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2974

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2973: 11341 - K11996 MOCS3, UBA4 adenylyltransferase and sulfurtransferase, at 688176 to 690178 11341 mRNA_2974: 11342 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 690635 to 692698 11342 mRNA_2975: 11343 - KOG3072 Long chain fatty acid elongase, at 693422 to 694637 11343

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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689,656 + 11341 mRNA_2973 0.74 -0.5
689,670 + 11341 mRNA_2973 0.75 0.3
689,775 - 11341 mRNA_2973 0.80 0.2
689,782 + 11341 mRNA_2973 0.80 -0.6
689,912 - 11341 mRNA_2973 0.87 -0.5
689,932 + 11341 mRNA_2973 0.88 0.4
690,059 + 0.9
690,061 + 1.1
690,090 + 0.5
690,247 - 0.9
690,352 - -0.5
690,410 - -0.6
690,525 + -0.2
690,658 + 1.4
690,806 - -1.1
690,806 - 2.0
690,822 + -2.3
690,842 + 11342 mRNA_2974 0.10 0.5
690,975 + 11342 mRNA_2974 0.16 1.1
690,978 - 11342 mRNA_2974 0.17 -1.4
690,996 + 11342 mRNA_2974 0.17 -0.2
691,269 + 11342 mRNA_2974 0.31 1.1
691,374 - 11342 mRNA_2974 0.36 -0.3
691,520 + 11342 mRNA_2974 0.43 2.7
691,651 + 11342 mRNA_2974 0.49 -0.3
691,691 - 11342 mRNA_2974 0.51 -1.3
691,730 - 11342 mRNA_2974 0.53 1.3
691,947 - 11342 mRNA_2974 0.64 0.8
692,010 - 11342 mRNA_2974 0.67 -0.2
692,072 - 11342 mRNA_2974 0.70 0.5
692,139 + 11342 mRNA_2974 0.73 1.3
692,552 + 0.3
692,830 + -0.4
692,836 + 1.5
692,841 + -0.6
692,850 + 0.4
692,866 - -0.3
692,867 - 1.4
692,919 + 2.2
692,928 + -1.0
692,929 + 0.0
692,929 - -0.8
692,932 + -0.8
692,935 - 0.8
692,937 - -0.8
692,938 + 2.6
692,941 + 1.3
692,942 + 0.9
692,944 + 0.0
692,944 + -0.1
692,948 - 0.9
692,948 + 0.1
692,951 + -1.1
692,952 + -1.0
692,954 + -1.9
692,957 + 0.6
692,964 - -0.5
692,969 - -1.0
692,983 + -0.2
692,999 - -0.6
693,000 + -0.6
693,002 - 0.4
693,006 + -0.0
693,007 + 0.6
693,173 + -0.5
693,191 - 0.5
693,294 - 0.4
693,454 - 0.2
693,479 + 1.4
693,482 + -0.5
693,631 + 11343 mRNA_2975 0.17 0.9
693,640 + 11343 mRNA_2975 0.18 0.3
693,647 - 11343 mRNA_2975 0.19 0.1
693,654 - 11343 mRNA_2975 0.19 0.9
693,655 + 11343 mRNA_2975 0.19 2.0
693,682 + 11343 mRNA_2975 0.21 -0.6