Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2907

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2906: 11274 - K02960 RP-S16e, RPS16 small subunit ribosomal protein S16e, at 508633 to 509349 11274 mRNA_2907: 11275 - HMMPfam-FAD dependent oxidoreductase-PF01266,SUPERFAMILY--SSF51971, at 510278 to 512745 11275 mRNA_2908: 11276 - KOG3098 Uncharacterized conserved protein, at 512850 to 515031 11276

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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509,860 - 1.0
509,883 + 0.7
509,890 + -3.1
509,890 + -2.8
509,893 - -0.5
509,905 + -2.3
509,906 - 2.1
510,070 + 0.3
510,133 + -1.6
510,141 - -0.1
510,141 - -0.0
510,144 + -0.4
510,151 + -0.3
510,157 + 1.4
510,172 + -0.3
510,188 - 0.0
510,194 - -3.0
510,204 - 1.3
510,210 + 0.1
510,223 + -0.2
510,240 + -0.2
510,319 - -0.4
510,334 + -0.6
510,342 + 0.9
510,383 - 0.7
510,395 + 0.8
510,497 - -1.3
511,249 - 11275 mRNA_2907 0.39 2.5
511,360 - 11275 mRNA_2907 0.44 -1.6
511,686 - 11275 mRNA_2907 0.57 0.2
511,708 - 11275 mRNA_2907 0.58 0.6
511,795 + 11275 mRNA_2907 0.61 0.8
512,080 - 11275 mRNA_2907 0.73 -1.3
512,083 + 11275 mRNA_2907 0.73 0.3
512,122 + 11275 mRNA_2907 0.75 -1.9
512,243 - 11275 mRNA_2907 0.80 -1.1
512,542 - -0.2
512,692 + -0.2
512,702 - 0.7
512,941 + -1.5
513,269 - 11276 mRNA_2908 0.19 -3.2
513,336 - 11276 mRNA_2908 0.22 -0.3
513,362 - 11276 mRNA_2908 0.23 0.2
513,382 + 11276 mRNA_2908 0.24 -1.1
513,497 + 11276 mRNA_2908 0.30 -0.2
513,531 + 11276 mRNA_2908 0.31 -0.1
513,569 + 11276 mRNA_2908 0.33 -0.5
513,571 - 11276 mRNA_2908 0.33 0.1
513,601 - 11276 mRNA_2908 0.34 -0.8
513,617 - 11276 mRNA_2908 0.35 0.4
513,617 - 11276 mRNA_2908 0.35 0.9
513,624 + 11276 mRNA_2908 0.35 -0.1
513,629 - 11276 mRNA_2908 0.36 1.0
513,631 + 11276 mRNA_2908 0.36 1.6
513,640 + 11276 mRNA_2908 0.36 -0.0
513,643 - 11276 mRNA_2908 0.36 0.4
513,680 + 11276 mRNA_2908 0.38 0.3
513,683 - 11276 mRNA_2908 0.38 -1.9