Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2888

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2887: 11255 - K07442 TRM61, GCD14 tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit, at 458953 to 460669 11255 mRNA_2888: 11256 - KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain, at 461121 to 465686 11256 mRNA_2889: 11257 - K08184 SLC16A7 MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 7, at 466050 to 468099 11257

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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460,666 + -0.0
460,673 - -0.3
460,845 - 0.5
460,875 - 0.7
460,939 - 1.6
460,958 - 0.5
460,973 - -2.2
460,975 + -0.1
460,985 - -0.3
460,985 + -1.0
460,998 - -1.5
461,000 + -1.9
461,005 + -0.1
461,019 - -0.9
461,102 - 1.1
461,131 + -1.4
461,131 + 1.8
461,139 - 0.3
461,173 + -1.8
461,231 - -0.5
461,277 - -0.6
461,289 - -2.0
461,318 - 1.3
461,326 + 0.1
461,384 + 0.9
461,411 - -0.7
461,449 - 0.0
461,475 - -0.4
461,595 + 11256 mRNA_2888 0.10 -0.1
461,720 + 11256 mRNA_2888 0.13 0.2
461,847 + 11256 mRNA_2888 0.16 -2.3
461,986 - 11256 mRNA_2888 0.19 0.7
462,151 + 11256 mRNA_2888 0.23 0.7
462,306 - 11256 mRNA_2888 0.26 2.0
462,318 + 11256 mRNA_2888 0.26 -0.7
462,367 - 11256 mRNA_2888 0.27 0.5
462,563 - 11256 mRNA_2888 0.32 -1.2
462,682 + 11256 mRNA_2888 0.34 0.3
462,883 - 11256 mRNA_2888 0.39 -0.4
462,940 + 11256 mRNA_2888 0.40 0.2
463,043 + 11256 mRNA_2888 0.42 0.1
463,233 - 11256 mRNA_2888 0.46 0.1
463,331 + 11256 mRNA_2888 0.48 -1.3
463,377 + 11256 mRNA_2888 0.49 -0.3
463,379 - 11256 mRNA_2888 0.49 0.6
463,419 + 11256 mRNA_2888 0.50 -0.4
463,482 + 11256 mRNA_2888 0.52 -0.3
463,636 + 11256 mRNA_2888 0.55 -0.0
464,057 - 11256 mRNA_2888 0.64 -0.5
464,215 - 11256 mRNA_2888 0.68 0.3
464,239 - 11256 mRNA_2888 0.68 -1.9
464,372 - 11256 mRNA_2888 0.71 -1.1
464,373 - 11256 mRNA_2888 0.71 -0.1
464,408 + 11256 mRNA_2888 0.72 1.1
464,524 + 11256 mRNA_2888 0.75 0.4
464,598 - 11256 mRNA_2888 0.76 -1.0
464,624 + 11256 mRNA_2888 0.77 -0.8
464,625 - 11256 mRNA_2888 0.77 0.2
464,780 - 11256 mRNA_2888 0.80 -0.2
464,955 + 11256 mRNA_2888 0.84 -0.7
464,982 - 11256 mRNA_2888 0.85 -0.8
465,112 - 11256 mRNA_2888 0.87 1.7
465,119 + 11256 mRNA_2888 0.88 -1.9
465,129 + 11256 mRNA_2888 0.88 1.1
465,154 - 11256 mRNA_2888 0.88 -2.3
465,289 + -0.3
465,571 + -1.3
465,846 - 0.8
465,865 + 0.2
465,933 - -0.5
465,968 - -1.1
465,973 + -0.7
465,982 + 2.7
465,983 - -0.2
465,991 + -1.5
466,133 - -0.7
466,153 - 0.1
466,193 + -0.3
466,270 - 11257 mRNA_2889 0.11 -0.4
466,271 - 11257 mRNA_2889 0.11 -0.7
466,284 + 11257 mRNA_2889 0.11 2.6