Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2877

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2876: 11244 - K18715 NUP159 nucleoporin NUP159, at 422380 to 429450 11244 mRNA_2877: 11245 - Hypothetical Protein, at 429678 to 431024 11245 mRNA_2878: 11246 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 431152 to 434004 11246

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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428,992 - -1.0
429,040 + 0.8
429,065 - 0.4
429,498 + -1.7
429,577 - -0.2
429,599 + -0.1
429,614 - 0.0
429,643 - 0.7
430,046 + 11245 mRNA_2877 0.27 -0.1
430,091 - 11245 mRNA_2877 0.31 1.4
430,225 + 11245 mRNA_2877 0.41 -0.8
430,330 + 11245 mRNA_2877 0.48 0.2
430,497 + 11245 mRNA_2877 0.61 -1.0
430,563 + 11245 mRNA_2877 0.66 0.3
431,154 - -0.2
431,229 + -2.1
431,454 - 11246 mRNA_2878 0.11 0.4
431,571 - 11246 mRNA_2878 0.15 -0.3
431,591 + 11246 mRNA_2878 0.15 0.9
432,021 + 11246 mRNA_2878 0.30 0.6