Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2826

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2825: 11193 - HMMPfam-F-box-like-PF12937, at 306880 to 308238 11193 mRNA_2826: 11194 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 308472 to 309591 11194 mRNA_2827: 11195 - Hypothetical Protein, at 309657 to 312569 11195

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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307,908 - 11193 mRNA_2825 0.76 -0.2
307,921 - 11193 mRNA_2825 0.77 0.3
307,924 - 11193 mRNA_2825 0.77 0.5
307,927 - 11193 mRNA_2825 0.77 0.9
307,950 + 11193 mRNA_2825 0.79 2.5
308,070 - 11193 mRNA_2825 0.88 0.1
308,071 + 11193 mRNA_2825 0.88 0.5
308,083 + 11193 mRNA_2825 0.89 1.7
308,088 - 11193 mRNA_2825 0.89 0.2
308,091 - 11193 mRNA_2825 0.89 -2.3
308,091 + 11193 mRNA_2825 0.89 1.3
308,198 - -1.4
308,198 - -0.3
308,203 - -1.1
308,209 + 0.9
308,209 + -0.8
308,212 - -0.7
308,213 + -0.2
308,216 + -0.0
308,232 + 1.3
308,245 - -0.0
308,261 - 0.3
308,262 + 0.3
308,359 + 0.2
308,372 + 0.3
308,388 + 1.1
308,395 + 1.3
308,401 + 0.1
308,417 - 1.2
308,418 - -0.8
308,418 + -2.2
308,424 - -0.1
308,431 - -1.1
308,535 + -0.0
308,557 - -1.0
308,569 + 0.9
308,579 + 0.2
308,582 - -0.2
308,583 - 0.6
308,586 - 11194 mRNA_2826 0.10 -1.2
308,589 - 11194 mRNA_2826 0.10 -0.3
308,708 + 11194 mRNA_2826 0.21 -0.0
308,725 - 11194 mRNA_2826 0.23 0.8
308,870 + 11194 mRNA_2826 0.36 -0.7
308,997 + 11194 mRNA_2826 0.47 0.4
309,058 + 11194 mRNA_2826 0.52 0.1
309,177 - 11194 mRNA_2826 0.63 1.1
309,632 + -0.6
309,714 + 0.3