Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2795

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2794: 11162 - BLAST protein FAM72A [Rattus norvegicus], at 230035 to 232978 11162 mRNA_2795: 11163 - SUPERFAMILY--SSF56112, at 233342 to 236388 11163 mRNA_2796: 11164 - K08286 E2.7.11.- protein-serine/threonine kinase, at 236700 to 240335 11164

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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232,485 + 11162 mRNA_2794 0.83 0.6
232,513 + 11162 mRNA_2794 0.84 -0.3
232,545 + 11162 mRNA_2794 0.85 -0.9
232,635 + 11162 mRNA_2794 0.88 -0.3
232,635 - 11162 mRNA_2794 0.88 2.2
232,637 + 11162 mRNA_2794 0.88 -0.7
232,643 - 11162 mRNA_2794 0.89 1.4
232,668 - 11162 mRNA_2794 0.89 -0.6
232,673 - 11162 mRNA_2794 0.90 -0.4
232,673 - 11162 mRNA_2794 0.90 -0.9
232,673 - 11162 mRNA_2794 0.90 -0.6
232,674 + 11162 mRNA_2794 0.90 0.1
232,674 + 11162 mRNA_2794 0.90 1.3
232,674 + 11162 mRNA_2794 0.90 -0.0
232,674 + 11162 mRNA_2794 0.90 -1.0
232,684 + -0.6
232,738 + 0.7
232,885 - -0.7
232,905 - 0.2
232,935 - -0.1
232,935 - -0.1
232,953 - -2.0
232,958 + 0.5
233,045 - 0.3
233,077 - -1.0
233,080 + 0.2
233,087 + 2.0
233,091 + 1.4
233,113 - -0.0
233,183 + -0.3
233,239 - -2.8
233,379 - -0.1
233,642 - 0.5
233,772 + 11163 mRNA_2795 0.14 -1.8
234,047 - 11163 mRNA_2795 0.23 -1.5
234,075 + 11163 mRNA_2795 0.24 2.4
234,174 - 11163 mRNA_2795 0.27 2.1
234,254 + 11163 mRNA_2795 0.30 -2.6
234,422 + 11163 mRNA_2795 0.35 0.9
234,770 + 11163 mRNA_2795 0.47 -3.2
234,857 - 11163 mRNA_2795 0.50 -0.1
234,858 + 11163 mRNA_2795 0.50 0.8
234,942 + 11163 mRNA_2795 0.53 1.9
235,289 + 11163 mRNA_2795 0.64 -1.6
235,418 - 11163 mRNA_2795 0.68 0.2
235,679 - 11163 mRNA_2795 0.77 -2.9
235,693 - 11163 mRNA_2795 0.77 0.0
235,694 - 11163 mRNA_2795 0.77 0.2
235,713 + 11163 mRNA_2795 0.78 0.0
235,775 + 11163 mRNA_2795 0.80 0.7
235,822 + 11163 mRNA_2795 0.81 1.1
235,860 + 11163 mRNA_2795 0.83 1.1
236,129 + 0.0
236,291 + 0.0
236,302 - 0.5
236,326 + -1.7
236,487 + -0.3
236,589 + 1.5
236,604 + -0.4
236,621 - -0.9