Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2794

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2793: 11161 - KOG3834 Golgi reassembly stacking protein GRASP65, contains PDZ domain, at 228041 to 229604 11161 mRNA_2794: 11162 - BLAST protein FAM72A [Rattus norvegicus], at 230035 to 232978 11162 mRNA_2795: 11163 - SUPERFAMILY--SSF56112, at 233342 to 236388 11163

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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229,080 - 11161 mRNA_2793 0.66 -0.9
229,253 + 11161 mRNA_2793 0.77 -0.0
229,263 + 11161 mRNA_2793 0.78 -0.0
229,264 - 11161 mRNA_2793 0.78 0.3
229,314 - 11161 mRNA_2793 0.81 1.3
229,318 + 11161 mRNA_2793 0.82 0.5
229,528 - 2.4
229,546 + 1.4
229,553 + 1.2
229,556 + -0.0
229,806 + -2.2
229,838 + 0.6
229,846 + -0.3
229,873 + 0.2
229,958 + 0.3
229,989 - -0.8
229,991 + 0.3
229,991 - 1.3
230,289 - 0.4
230,312 + -0.2
230,595 + 11162 mRNA_2794 0.19 0.7
230,610 - 11162 mRNA_2794 0.20 0.3
230,615 + 11162 mRNA_2794 0.20 -1.4
230,616 + 11162 mRNA_2794 0.20 -2.5
230,616 - 11162 mRNA_2794 0.20 -1.4
230,758 - 11162 mRNA_2794 0.25 -0.6
230,889 - 11162 mRNA_2794 0.29 0.4
230,895 - 11162 mRNA_2794 0.29 -2.5
231,099 + 11162 mRNA_2794 0.36 1.1
231,212 - 11162 mRNA_2794 0.40 0.0
231,212 - 11162 mRNA_2794 0.40 -0.3
231,363 + 11162 mRNA_2794 0.45 -0.4
231,614 - 11162 mRNA_2794 0.54 0.6
232,039 - 11162 mRNA_2794 0.68 -2.1
232,275 - 11162 mRNA_2794 0.76 0.4
232,302 - 11162 mRNA_2794 0.77 -0.2
232,485 + 11162 mRNA_2794 0.83 0.6
232,513 + 11162 mRNA_2794 0.84 -0.3
232,545 + 11162 mRNA_2794 0.85 -0.9
232,635 + 11162 mRNA_2794 0.88 -0.3
232,635 - 11162 mRNA_2794 0.88 2.2
232,637 + 11162 mRNA_2794 0.88 -0.7
232,643 - 11162 mRNA_2794 0.89 1.4
232,668 - 11162 mRNA_2794 0.89 -0.6
232,673 - 11162 mRNA_2794 0.90 -0.4
232,673 - 11162 mRNA_2794 0.90 -0.9
232,673 - 11162 mRNA_2794 0.90 -0.6
232,674 + 11162 mRNA_2794 0.90 0.1
232,674 + 11162 mRNA_2794 0.90 1.3
232,674 + 11162 mRNA_2794 0.90 -0.0
232,674 + 11162 mRNA_2794 0.90 -1.0
232,684 + -0.6
232,738 + 0.7
232,885 - -0.7
232,905 - 0.2
232,935 - -0.1
232,935 - -0.1
232,953 - -2.0
232,958 + 0.5
233,045 - 0.3
233,077 - -1.0
233,080 + 0.2
233,087 + 2.0
233,091 + 1.4
233,113 - -0.0
233,183 + -0.3
233,239 - -2.8
233,379 - -0.1
233,642 - 0.5
233,772 + 11163 mRNA_2795 0.14 -1.8