Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2752

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2751: 11119 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 136255 to 137508 11119 mRNA_2752: 11120 - HMMPfam-F-box-like-PF12937, at 138009 to 139329 11120 mRNA_2753: 11121 - HMMPfam-F-box-like-PF12937, at 139767 to 141011 11121

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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137,128 - 11119 mRNA_2751 0.70 -0.5
137,393 + -1.9
137,429 - -0.4
137,455 + -0.2
137,554 + 1.2
137,672 - 1.0
137,708 - -0.7
137,716 - -0.4
137,734 + 0.1
137,758 + -1.7
137,883 + -0.5
137,894 - -0.4
138,013 - -0.7
138,021 + -0.4
138,141 - 11120 mRNA_2752 0.10 -0.8
138,190 + 11120 mRNA_2752 0.14 0.9
138,337 + 11120 mRNA_2752 0.25 -0.1
138,349 + 11120 mRNA_2752 0.26 1.1
138,463 - 11120 mRNA_2752 0.34 0.4
138,496 + 11120 mRNA_2752 0.37 -0.0
138,636 - 11120 mRNA_2752 0.47 0.2
138,741 - 11120 mRNA_2752 0.55 1.4
138,870 - 11120 mRNA_2752 0.65 -0.7
139,172 - 11120 mRNA_2752 0.88 0.9
139,193 - 11120 mRNA_2752 0.90 -1.2
139,205 - -0.2
139,306 - 0.2
139,327 + -1.4
139,328 - -0.7
139,344 - 0.8
139,392 + -0.4
139,474 + 0.9
139,478 - 0.8
139,482 - 0.3
139,485 + -0.8
139,497 + 0.1
139,505 - 0.0
139,542 + 2.2
139,630 - -2.1
139,643 - 1.0
139,652 - -0.3
139,671 - -0.1
139,713 - 1.6
139,769 - -0.2
139,812 + 0.6
139,912 + 11121 mRNA_2753 0.12 -0.1
140,231 + 11121 mRNA_2753 0.37 -2.6