Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2686

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2686: 11054 - Interpro Fungal potassium channel 0, at 510 to 3087 11054 mRNA_2687: 11055 - K16542 CDK5RAP2 CDK5 regulatory subunit-associated protein 2, at 3683 to 8144 11055

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1 + -0.7
28 + 1.0
28 + 1.8
37 + -0.5
37 + 1.3
38 + -0.3
44 + -0.1
48 - 0.8
49 + 0.2
49 + -0.6
49 + -0.0
49 + 0.9
49 + -0.2
49 + 0.4
49 - -1.3
52 + 0.5
54 - -0.7
54 - 1.6
58 + -0.3
62 + 2.4
70 - 0.6
73 + 0.7
74 - 2.6
74 + 0.5
112 - 0.6
120 - -0.3
138 + 1.1
142 + -2.5
142 + -0.4
142 + 0.7
144 + 0.6
145 - 0.2
147 + -1.3
152 + -0.3
159 + 1.8
159 - 0.2
163 + 1.0
169 - 0.2
170 + 2.3
171 - -0.1
173 + -0.3
175 - 0.3
176 + -1.1
177 + 0.3
183 + 0.2
193 + 0.3
205 + 1.1
231 + 2.9
232 + 1.3
235 - -2.8
252 - -0.1
259 + -0.1
259 + 0.3
259 + 1.7
262 - -0.0
269 + -0.4
273 + -0.8
275 - -0.8
289 + 0.5
299 + 0.3
312 - -0.6
339 + 1.3
352 + -0.3
357 + 1.0
358 + -0.3
368 - 1.2
417 - 0.1
429 + 0.9
434 + 0.7
445 + -0.2
462 + -0.3
462 + 0.7
502 + -0.8
529 - -0.5
540 - -0.5
561 + 1.8
584 + 0.9
584 - -0.7
584 + -0.8
633 + -1.1
636 + 0.3
646 + 1.0
703 - -1.0
736 - 0.0
772 - 11054 mRNA_2686 0.10 -2.3
845 - 11054 mRNA_2686 0.13 -0.2
871 + 11054 mRNA_2686 0.14 2.3
911 + 11054 mRNA_2686 0.16 -0.3
919 - 11054 mRNA_2686 0.16 1.5
922 + 11054 mRNA_2686 0.16 -1.0
937 - 11054 mRNA_2686 0.17 -0.4
946 - 11054 mRNA_2686 0.17 3.9
1,039 + 11054 mRNA_2686 0.21 0.8
1,042 - 11054 mRNA_2686 0.21 1.3
1,056 + 11054 mRNA_2686 0.21 0.8
1,056 + 11054 mRNA_2686 0.21 0.6
1,059 - 11054 mRNA_2686 0.21 -0.9
1,059 - 11054 mRNA_2686 0.21 -0.5
1,079 + 11054 mRNA_2686 0.22 0.7
1,089 + 11054 mRNA_2686 0.22 2.0
1,090 - 11054 mRNA_2686 0.22 0.5
1,099 - 11054 mRNA_2686 0.23 -0.3
1,116 - 11054 mRNA_2686 0.24 -0.4
1,219 - 11054 mRNA_2686 0.28 -0.1
1,230 + 11054 mRNA_2686 0.28 1.8
1,258 - 11054 mRNA_2686 0.29 -0.7
1,270 - 11054 mRNA_2686 0.29 2.5
1,272 + 11054 mRNA_2686 0.30 1.5
1,324 + 11054 mRNA_2686 0.32 -0.3
1,351 + 11054 mRNA_2686 0.33 -0.6
1,464 + 11054 mRNA_2686 0.37 0.7
1,508 + 11054 mRNA_2686 0.39 -0.9
1,514 - 11054 mRNA_2686 0.39 -0.7
1,611 + 11054 mRNA_2686 0.43 2.3
1,642 + 11054 mRNA_2686 0.44 0.2
1,671 + 11054 mRNA_2686 0.45 -0.3
1,680 + 11054 mRNA_2686 0.45 1.4
1,683 - 11054 mRNA_2686 0.46 0.9
1,684 + 11054 mRNA_2686 0.46 -0.0
1,699 + 11054 mRNA_2686 0.46 -0.3
1,836 + 11054 mRNA_2686 0.51 2.5
1,912 + 11054 mRNA_2686 0.54 2.2
1,961 - 11054 mRNA_2686 0.56 -1.2
2,068 - 11054 mRNA_2686 0.60 -2.7
2,071 - 11054 mRNA_2686 0.61 1.0
2,079 + 11054 mRNA_2686 0.61 0.9
2,096 - 11054 mRNA_2686 0.62 -0.4
2,112 + 11054 mRNA_2686 0.62 -0.2
2,128 + 11054 mRNA_2686 0.63 1.0
2,140 + 11054 mRNA_2686 0.63 -0.5
2,141 - 11054 mRNA_2686 0.63 0.9
2,158 + 11054 mRNA_2686 0.64 -1.8
2,196 + 11054 mRNA_2686 0.65 -0.5
2,238 + 11054 mRNA_2686 0.67 0.1
2,250 - 11054 mRNA_2686 0.67 0.5
2,271 + 11054 mRNA_2686 0.68 0.8
2,404 - 11054 mRNA_2686 0.73 -0.8
2,419 + 11054 mRNA_2686 0.74 1.0
2,442 - 11054 mRNA_2686 0.75 2.1
2,444 - 11054 mRNA_2686 0.75 -3.0
2,534 - 11054 mRNA_2686 0.79 -2.0
2,547 - 11054 mRNA_2686 0.79 0.0
2,564 + 11054 mRNA_2686 0.80 -0.1
2,685 - 11054 mRNA_2686 0.84 0.7
2,806 + 11054 mRNA_2686 0.89 -0.4
2,806 - 11054 mRNA_2686 0.89 -0.9
2,814 - 11054 mRNA_2686 0.89 -1.4
2,938 + -0.3
2,971 + -0.2
2,984 - -0.2
3,056 - -0.4
3,090 + -0.9
3,127 + 0.7
3,135 - 0.6
3,141 + 1.9
3,282 + 0.1
3,380 + -0.3
3,409 - 0.7