Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2672

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2671: 11039 - K00111 glpA, glpD glycerol-3-phosphate dehydrogenase, at 726293 to 729723 11039 mRNA_2672: 11040 - K20032 ZDHHC13_17, HIP14 palmitoyltransferase ZDHHC13/17, at 730581 to 733538 11040 mRNA_2673: 11041 - K10844 ERCC2, XPD DNA excision repair protein ERCC-2, at 734339 to 738341 11041

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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729,665 + 0.1
729,703 + 3.1
729,785 - 0.1
729,799 + 1.7
729,956 - -0.8
729,959 - 0.2
729,968 - 0.2
729,969 + 0.5
729,970 + -1.3
729,999 - 1.2
730,001 - -0.1
730,013 + 2.0
730,013 + 1.2
730,087 - -0.4
730,112 - -0.6
730,119 + -0.7
730,122 - 2.1
730,144 - 1.8
730,146 - 1.3
730,146 - 1.1
730,147 + 0.4
730,152 - 2.2
730,152 + -0.4
730,167 + 2.2
730,172 - -0.4
730,185 + -0.1
730,213 + -1.7
730,213 + -0.3
730,287 + 0.8
730,300 + -0.0
730,309 + 1.7
730,323 + 0.9
730,330 - 0.0
730,340 + 0.2
730,470 - -0.4
730,472 - 1.3
730,473 - 1.6
730,476 - -0.0
730,484 - 0.5
730,497 + 1.4
730,504 + 2.7
730,505 + 1.5
730,507 - 2.2
730,618 - 0.8
730,786 - 0.1
731,465 - 11040 mRNA_2672 0.30 0.6
731,639 + 11040 mRNA_2672 0.36 1.8
731,642 - 11040 mRNA_2672 0.36 2.2
732,207 + 11040 mRNA_2672 0.55 -0.1
732,262 - 11040 mRNA_2672 0.57 0.8
732,392 + 11040 mRNA_2672 0.61 0.5
732,614 + 11040 mRNA_2672 0.69 -0.5
732,964 + 11040 mRNA_2672 0.81 0.9
733,097 - 11040 mRNA_2672 0.85 1.2
733,154 + 11040 mRNA_2672 0.87 1.8
733,396 - 2.8
733,546 + 0.9
733,549 + 0.1
733,683 - 2.0
733,703 - -0.8
733,705 + 1.3
733,723 + -0.3
733,728 - -1.1
733,838 - 0.0
733,841 - -0.3
733,870 - -2.2
734,150 + 0.6