Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2636

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2635: 11003 - KOG2615 Permease of the major facilitator superfamily, at 644639 to 646229 11003 mRNA_2636: 11004 - K01303 APEH acylaminoacyl-peptidase, at 646481 to 649252 11004 mRNA_2637: 11005 - HMMPfam-Sulphur transport-PF04143,HMMPfam-Domain of unknown function (DUF4341)-PF14241, at 649432 to 650669 11005

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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645,634 - 11003 mRNA_2635 0.63 -1.7
645,787 - 11003 mRNA_2635 0.72 0.7
645,908 - 11003 mRNA_2635 0.80 0.1
645,972 - 11003 mRNA_2635 0.84 -0.5
646,089 - -0.8
646,189 + 0.7
646,220 + 1.1
646,408 + 1.0
646,424 - 2.0
646,534 - -1.9
646,573 + 1.4
646,576 - 0.7
646,580 + -2.2
646,664 + 0.1
646,811 + 11004 mRNA_2636 0.12 -0.8
646,812 - 11004 mRNA_2636 0.12 -0.8
646,826 - 11004 mRNA_2636 0.12 1.0
646,995 - 11004 mRNA_2636 0.19 -0.5
646,995 + 11004 mRNA_2636 0.19 -0.8
647,213 - 11004 mRNA_2636 0.26 -0.2
647,214 + 11004 mRNA_2636 0.26 0.7
647,214 + 11004 mRNA_2636 0.26 -0.6
647,424 - 11004 mRNA_2636 0.34 1.7
647,448 - 11004 mRNA_2636 0.35 -0.3
647,553 - 11004 mRNA_2636 0.39 1.6
647,582 - 11004 mRNA_2636 0.40 -1.3
647,679 - 11004 mRNA_2636 0.43 0.1
647,803 + 11004 mRNA_2636 0.48 0.7
648,268 - 11004 mRNA_2636 0.64 -0.8
648,551 - 11004 mRNA_2636 0.75 -0.4
648,577 + 11004 mRNA_2636 0.76 0.1
648,583 - 11004 mRNA_2636 0.76 2.4
648,664 + 11004 mRNA_2636 0.79 -1.1
648,710 - 11004 mRNA_2636 0.80 1.1
648,715 + 11004 mRNA_2636 0.81 0.9
648,995 - -0.3
649,000 - 1.7
649,005 - 0.0
649,031 + -0.3
649,124 - -0.2
649,157 + -0.7
649,157 + 0.8
649,206 + 0.5
649,319 + -0.8
649,335 + -0.2
649,340 + 0.6
649,340 - -1.8
649,342 - -0.7
649,358 + -0.4
649,372 + 2.6
649,384 + 0.1
649,531 + -3.1
649,625 - 11005 mRNA_2637 0.16 -1.5
649,629 + 11005 mRNA_2637 0.16 -3.3
649,756 - 11005 mRNA_2637 0.26 -0.4
649,777 - 11005 mRNA_2637 0.28 0.7
649,781 + 11005 mRNA_2637 0.28 -0.3
649,786 + 11005 mRNA_2637 0.29 -1.0
649,794 + 11005 mRNA_2637 0.29 -0.1
649,951 - 11005 mRNA_2637 0.42 -0.0
650,041 - 11005 mRNA_2637 0.49 0.9
650,060 - 11005 mRNA_2637 0.51 -0.2
650,181 - 11005 mRNA_2637 0.61 -0.1
650,228 - 11005 mRNA_2637 0.64 -0.5