Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2635

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2634: 11002 - KOG2234 Predicted UDP-galactose transporter, at 641734 to 644523 11002 mRNA_2635: 11003 - KOG2615 Permease of the major facilitator superfamily, at 644639 to 646229 11003 mRNA_2636: 11004 - K01303 APEH acylaminoacyl-peptidase, at 646481 to 649252 11004

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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643,704 - 11002 mRNA_2634 0.71 0.3
643,713 + 11002 mRNA_2634 0.71 -1.1
643,725 + 11002 mRNA_2634 0.71 1.2
643,793 - 11002 mRNA_2634 0.74 0.4
644,056 - 11002 mRNA_2634 0.83 -2.1
644,060 - 11002 mRNA_2634 0.83 -1.9
644,152 + 11002 mRNA_2634 0.87 0.2
644,175 - 11002 mRNA_2634 0.87 0.0
644,226 + 11002 mRNA_2634 0.89 0.0
644,433 - -0.7
644,733 + 0.3
644,761 + -0.5
644,894 + 11003 mRNA_2635 0.16 0.3
645,042 - 11003 mRNA_2635 0.25 1.4
645,054 + 11003 mRNA_2635 0.26 0.5
645,119 - 11003 mRNA_2635 0.30 -0.3
645,182 - 11003 mRNA_2635 0.34 0.5
645,317 - 11003 mRNA_2635 0.43 2.0
645,317 + 11003 mRNA_2635 0.43 0.5
645,384 + 11003 mRNA_2635 0.47 2.4
645,394 + 11003 mRNA_2635 0.47 0.9
645,474 - 11003 mRNA_2635 0.52 -0.9
645,634 - 11003 mRNA_2635 0.63 -1.7
645,787 - 11003 mRNA_2635 0.72 0.7
645,908 - 11003 mRNA_2635 0.80 0.1
645,972 - 11003 mRNA_2635 0.84 -0.5
646,089 - -0.8
646,189 + 0.7
646,220 + 1.1
646,408 + 1.0
646,424 - 2.0
646,534 - -1.9
646,573 + 1.4
646,576 - 0.7
646,580 + -2.2
646,664 + 0.1
646,811 + 11004 mRNA_2636 0.12 -0.8
646,812 - 11004 mRNA_2636 0.12 -0.8
646,826 - 11004 mRNA_2636 0.12 1.0
646,995 - 11004 mRNA_2636 0.19 -0.5
646,995 + 11004 mRNA_2636 0.19 -0.8
647,213 - 11004 mRNA_2636 0.26 -0.2
647,214 + 11004 mRNA_2636 0.26 0.7
647,214 + 11004 mRNA_2636 0.26 -0.6