Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2628

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2627: 10995 - K05941 E2.3.2.15 glutathione gamma-glutamylcysteinyltransferase, at 624250 to 625308 10995 mRNA_2628: 10996 - K09468 MSN2_4 zinc finger protein MSN2/4, at 625936 to 628159 10996 mRNA_2629: 10997 - Hypothetical Protein, at 628565 to 629191 10997

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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624,948 - 10995 mRNA_2627 0.66 -1.2
625,525 + -1.8
625,526 + 0.4
625,531 + -1.1
625,652 - 0.4
625,658 - -1.4
625,663 + -3.8
625,675 + 1.2
625,692 + -0.0
625,816 - 0.7
625,821 + 1.6
625,831 + -0.4
625,942 - 0.4
626,101 + -0.0
626,398 - 10996 mRNA_2628 0.21 -1.9
626,537 + 10996 mRNA_2628 0.27 0.2
626,542 + 10996 mRNA_2628 0.27 -1.2
626,548 + 10996 mRNA_2628 0.28 0.0
626,564 + 10996 mRNA_2628 0.28 0.5
626,686 - 10996 mRNA_2628 0.34 -0.6
626,720 + 10996 mRNA_2628 0.35 -1.6
627,422 + 10996 mRNA_2628 0.67 -1.4
627,437 + 10996 mRNA_2628 0.67 0.1
627,582 + 10996 mRNA_2628 0.74 0.7
627,845 - 10996 mRNA_2628 0.86 0.3
628,056 - 1.8
628,154 + -1.5
628,203 - -1.4
628,220 - 1.1
628,281 - -0.1
628,477 - -0.1
628,531 - -2.4
628,717 - 10997 mRNA_2629 0.24 0.1
628,805 - 10997 mRNA_2629 0.38 2.8
628,947 + 10997 mRNA_2629 0.61 0.2
628,970 - 10997 mRNA_2629 0.65 0.0
628,971 - 10997 mRNA_2629 0.65 0.2
629,017 - 10997 mRNA_2629 0.72 -2.2
629,095 - 10997 mRNA_2629 0.85 -0.4
629,107 - 10997 mRNA_2629 0.86 -0.7
629,121 - 10997 mRNA_2629 0.89 1.1
629,130 + 1.2
629,155 - -2.3