Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2584

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2583: 10951 - K10610 DDB1 DNA damage-binding protein 1, at 495200 to 499404 10951 mRNA_2584: 10952 - K12350 SMPD1, ASM sphingomyelin phosphodiesterase, at 499644 to 502553 10952 mRNA_2585: 10953 - K18167 SDHAF1 succinate dehydrogenase assembly factor 1, at 503292 to 503677 10953

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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498,861 - 10951 mRNA_2583 0.87 0.8
498,918 + 10951 mRNA_2583 0.88 -2.0
499,013 + -0.4
499,320 + -1.4
499,323 - 1.6
499,471 + -0.9
499,479 - 0.2
499,635 - -0.6
499,639 + -0.9
499,751 - 0.7
499,757 - 0.7
499,760 - -0.2
499,773 - -0.5
499,778 + -0.5
499,778 + 0.3
499,885 - 0.8
499,942 - 10952 mRNA_2584 0.10 0.4
500,074 + 10952 mRNA_2584 0.15 -0.1
500,203 - 10952 mRNA_2584 0.19 0.9
500,212 - 10952 mRNA_2584 0.20 -0.9
500,227 + 10952 mRNA_2584 0.20 1.0
500,252 + 10952 mRNA_2584 0.21 -1.4
500,322 + 10952 mRNA_2584 0.23 1.6
500,329 - 10952 mRNA_2584 0.24 0.2
500,384 + 10952 mRNA_2584 0.25 -0.2
500,397 - 10952 mRNA_2584 0.26 -1.6
500,402 - 10952 mRNA_2584 0.26 0.5
500,478 - 10952 mRNA_2584 0.29 1.1
500,617 + 10952 mRNA_2584 0.33 -0.4
500,639 - 10952 mRNA_2584 0.34 0.2
500,763 + 10952 mRNA_2584 0.38 0.5
500,850 - 10952 mRNA_2584 0.41 -0.6
500,914 + 10952 mRNA_2584 0.44 -0.5
500,918 - 10952 mRNA_2584 0.44 -0.5
500,994 + 10952 mRNA_2584 0.46 -1.3
501,095 - 10952 mRNA_2584 0.50 1.1
501,162 - 10952 mRNA_2584 0.52 -0.3
501,562 + 10952 mRNA_2584 0.66 -1.2
501,599 + 10952 mRNA_2584 0.67 -0.2
501,674 + 10952 mRNA_2584 0.70 0.4
501,817 - 10952 mRNA_2584 0.75 -0.3
501,817 - 10952 mRNA_2584 0.75 0.5
501,850 - 10952 mRNA_2584 0.76 -0.0
501,857 - 10952 mRNA_2584 0.76 0.2
501,943 - 10952 mRNA_2584 0.79 -0.2
501,967 + 10952 mRNA_2584 0.80 -0.2
502,129 + 10952 mRNA_2584 0.85 0.0
502,132 - 10952 mRNA_2584 0.85 -1.2
502,279 + 0.3
502,309 - -0.1
502,316 + -1.2
502,317 + 0.5
502,379 + -1.7
502,392 - -1.0
502,460 + 0.2
502,559 + -0.2
502,662 - 0.9
502,722 + -1.0
502,840 - 0.5
502,840 - 0.9
502,840 - 0.2
502,844 - 1.1
503,258 - -0.7
503,276 + -3.8
503,402 - 10953 mRNA_2585 0.28 -0.4
503,418 + 10953 mRNA_2585 0.33 -0.8