Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2568

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2567: 10935 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 461158 to 463055 10935 mRNA_2568: 10936 - KOG2504 Monocarboxylate transporter, at 463556 to 465484 10936 mRNA_2569: 10937 - K07250 gabT 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase, at 466083 to 468142 10937

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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462,694 - 10935 mRNA_2567 0.81 0.4
462,886 + -0.9
463,011 + 1.5
463,143 - -0.2
463,260 + 0.1
463,456 + -0.3
463,474 + 0.9
463,523 - -0.9
463,527 - 0.8
463,535 - 0.5
463,537 - -0.7
463,579 + -1.0
463,649 - -0.5
463,686 + -1.0
463,687 - -0.2
463,747 + 1.4
463,835 + 10936 mRNA_2568 0.14 -1.3
463,842 + 10936 mRNA_2568 0.15 -0.3
463,925 - 10936 mRNA_2568 0.19 2.3
463,956 + 10936 mRNA_2568 0.21 -0.9
464,037 - 10936 mRNA_2568 0.25 1.5
464,062 - 10936 mRNA_2568 0.26 -0.2
464,082 + 10936 mRNA_2568 0.27 0.5
464,226 + 10936 mRNA_2568 0.35 -2.0
464,796 - 10936 mRNA_2568 0.64 -0.7
465,364 + -0.3
465,378 - -0.2
465,379 + -1.5
465,390 - -0.9
465,531 - -2.2
465,666 - 0.1
465,667 - -1.8
465,674 - -0.2
465,684 + 0.7
465,687 + -0.1
465,693 + -0.1
465,725 + -0.8
465,732 + 0.2
465,822 - 2.4
465,855 - 0.3
465,857 - 1.0
465,877 + -1.4
465,888 - 2.2
465,889 - 2.2
465,892 + -0.9
465,903 + -0.2
465,912 - 1.1
465,920 + -0.9
465,928 - -0.7
465,965 - -0.8
465,987 + 0.2
465,990 + 0.8
466,014 + -1.2
466,015 - -1.4
466,021 + -0.7
466,155 - 0.4
466,157 + -1.1
466,309 - 10937 mRNA_2569 0.11 -0.4