Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2534

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2533: 10901 - K10706 SETX, ALS4 senataxin, at 377456 to 384141 10901 mRNA_2534: 10902 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 384523 to 387549 10902 mRNA_2535: 10903 - Hypothetical Protein, at 387572 to 388066 10903 mRNA_2536: 10904 - K15601 KDM3 lysine-specific demethylase 3, at 388426 to 391874 10904

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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383,639 - 1.3
383,775 + 0.3
383,796 + -0.4
384,097 - 1.2
384,218 - 1.5
384,234 - 0.8
384,238 + 1.0
384,340 - -0.4
384,379 - -0.4
384,383 - -0.9
384,392 + 0.2
384,441 + -0.2
384,530 - -1.3
384,549 + 0.1
384,865 - 10902 mRNA_2534 0.11 0.8
385,004 + 10902 mRNA_2534 0.16 0.4
385,093 - 10902 mRNA_2534 0.19 -0.9
385,430 - 10902 mRNA_2534 0.30 0.2
385,434 + 10902 mRNA_2534 0.30 1.3
385,584 + 10902 mRNA_2534 0.35 -0.3
385,692 - 10902 mRNA_2534 0.39 -0.5
385,719 + 10902 mRNA_2534 0.40 1.8
385,746 + 10902 mRNA_2534 0.40 0.6
385,830 + 10902 mRNA_2534 0.43 0.6
385,880 - 10902 mRNA_2534 0.45 2.4
386,036 + 10902 mRNA_2534 0.50 -1.2
386,115 - 10902 mRNA_2534 0.53 0.1
386,304 + 10902 mRNA_2534 0.59 1.1
386,311 + 10902 mRNA_2534 0.59 1.8
386,339 + 10902 mRNA_2534 0.60 0.8
386,417 + 10902 mRNA_2534 0.63 1.7
386,440 - 10902 mRNA_2534 0.63 1.2
386,729 + 10902 mRNA_2534 0.73 0.0
386,780 - 10902 mRNA_2534 0.75 1.2
386,987 - 10902 mRNA_2534 0.81 1.6
387,087 + 10902 mRNA_2534 0.85 0.1
387,088 + 10902 mRNA_2534 0.85 0.2
387,153 + 10902 mRNA_2534 0.87 -0.3
387,167 - 10902 mRNA_2534 0.87 1.4
387,171 - 10902 mRNA_2534 0.87 -1.1
387,172 + 10902 mRNA_2534 0.88 0.9
387,174 + 10902 mRNA_2534 0.88 -0.2
387,200 - 10902 mRNA_2534 0.88 1.9
387,462 + 0.1
387,470 - -0.3
387,479 + 0.0
387,484 + 1.8
387,492 - 1.5
387,608 + 0.5
387,611 - 1.8
387,615 + -1.6
387,623 - 10903 mRNA_2535 0.10 0.2
387,628 + 10903 mRNA_2535 0.11 0.8
387,630 - 10903 mRNA_2535 0.12 -0.6
387,637 + 10903 mRNA_2535 0.13 1.4
387,637 - 10903 mRNA_2535 0.13 1.4
387,638 - 10903 mRNA_2535 0.13 -0.8
387,639 + 10903 mRNA_2535 0.14 1.1
387,641 + 10903 mRNA_2535 0.14 -0.0
387,641 - 10903 mRNA_2535 0.14 -0.7
387,642 - 10903 mRNA_2535 0.14 0.6
387,643 + 10903 mRNA_2535 0.14 -0.2
387,643 - 10903 mRNA_2535 0.14 0.0
387,644 + 10903 mRNA_2535 0.15 -0.2
387,644 + 10903 mRNA_2535 0.15 0.2
387,644 + 10903 mRNA_2535 0.15 0.9
387,644 + 10903 mRNA_2535 0.15 -0.0
387,648 + 10903 mRNA_2535 0.15 -1.1
387,649 - 10903 mRNA_2535 0.16 0.0
387,650 - 10903 mRNA_2535 0.16 -1.1
387,652 + 10903 mRNA_2535 0.16 -0.9
387,656 + 10903 mRNA_2535 0.17 -1.2
387,658 - 10903 mRNA_2535 0.17 -0.1
387,659 + 10903 mRNA_2535 0.18 0.0
387,665 - 10903 mRNA_2535 0.19 0.2
387,670 - 10903 mRNA_2535 0.20 -1.2
387,671 - 10903 mRNA_2535 0.20 -0.1
387,673 + 10903 mRNA_2535 0.20 0.7
387,675 - 10903 mRNA_2535 0.21 -0.7
387,677 - 10903 mRNA_2535 0.21 -0.5
387,677 - 10903 mRNA_2535 0.21 2.3
387,678 + 10903 mRNA_2535 0.21 0.3
387,678 + 10903 mRNA_2535 0.21 -2.1
387,678 + 10903 mRNA_2535 0.21 0.6
387,684 - 10903 mRNA_2535 0.23 -1.6
387,686 + 10903 mRNA_2535 0.23 -0.3
387,689 + 10903 mRNA_2535 0.24 -0.1
387,695 - 10903 mRNA_2535 0.25 -2.5
387,698 + 10903 mRNA_2535 0.25 -0.3
387,698 - 10903 mRNA_2535 0.25 0.1
387,719 + 10903 mRNA_2535 0.30 1.1
387,721 + 10903 mRNA_2535 0.30 -0.1
387,733 + 10903 mRNA_2535 0.33 0.1
387,749 + 10903 mRNA_2535 0.36 0.4
387,756 - 10903 mRNA_2535 0.37 1.9
387,765 - 10903 mRNA_2535 0.39 -1.7
387,783 - 10903 mRNA_2535 0.43 1.1
387,792 + 10903 mRNA_2535 0.44 -0.7
387,812 + 10903 mRNA_2535 0.48 1.0
387,819 - 10903 mRNA_2535 0.50 -0.0
387,829 - 10903 mRNA_2535 0.52 -0.7
387,830 - 10903 mRNA_2535 0.52 0.3
387,832 + 10903 mRNA_2535 0.53 0.0
387,839 + 10903 mRNA_2535 0.54 -1.0
387,846 + 10903 mRNA_2535 0.55 1.2
387,857 - 10903 mRNA_2535 0.58 1.3
387,857 - 10903 mRNA_2535 0.58 0.9
387,858 - 10903 mRNA_2535 0.58 -1.4
387,873 + 10903 mRNA_2535 0.61 0.8
387,874 - 10903 mRNA_2535 0.61 0.9
387,877 - 10903 mRNA_2535 0.62 0.4
387,880 + 10903 mRNA_2535 0.62 -0.1
387,881 + 10903 mRNA_2535 0.62 1.3
387,882 + 10903 mRNA_2535 0.63 0.4
387,885 + 10903 mRNA_2535 0.63 -0.2
387,897 - 10903 mRNA_2535 0.66 -1.3
387,901 + 10903 mRNA_2535 0.66 -0.4
387,901 - 10903 mRNA_2535 0.66 -0.4
387,902 + 10903 mRNA_2535 0.67 0.7
387,915 + 10903 mRNA_2535 0.69 0.9
387,945 + 10903 mRNA_2535 0.75 0.1
388,010 + 10903 mRNA_2535 0.88 -0.5
388,022 + 0.6
388,035 + 0.3
388,037 - -1.0
388,041 - 0.4
388,052 - -0.1
388,056 - -0.0
388,060 + 0.3
388,062 - -0.2
388,062 + -0.5
388,062 - 0.4
388,093 + 0.8
388,186 - -0.6
388,210 + 1.0
388,215 + -1.6
388,229 + -0.1
388,246 + 2.5
388,259 - -1.4
388,278 - 2.3
388,318 - 0.1
388,351 - 0.1
388,360 + 0.7
388,360 + 0.3
388,363 - -0.0
388,368 + -1.1
388,369 - 0.1