Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2496

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2495: 10863 - K03507 DPB11 DNA replication regulator DPB11, at 283554 to 287606 10863 mRNA_2496: 10864 - KOG0254 Predicted transporter (major facilitator superfamily), at 288113 to 290739 10864 mRNA_2497: 10865 - KOG0379 Kelch repeat-containing proteins, at 291079 to 294153 10865

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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287,625 - -0.8
287,896 - 0.6
287,906 - -0.4
287,907 - -0.1
287,912 + 0.2
288,064 + 0.5
288,071 - 0.5
288,079 + 0.6
288,237 + 0.5
288,367 + -0.1
288,386 - 10864 mRNA_2496 0.10 -1.4
288,655 + 10864 mRNA_2496 0.21 3.1
288,657 - 10864 mRNA_2496 0.21 -0.4
289,381 - 10864 mRNA_2496 0.48 0.6
289,685 + 10864 mRNA_2496 0.60 -0.0
289,753 - 10864 mRNA_2496 0.62 -0.6
290,112 - 10864 mRNA_2496 0.76 2.7
290,113 + 10864 mRNA_2496 0.76 -0.1
290,155 + 10864 mRNA_2496 0.78 -0.3
290,193 + 10864 mRNA_2496 0.79 1.0
290,196 - 10864 mRNA_2496 0.79 2.0
290,263 - 10864 mRNA_2496 0.82 0.6
290,345 + 10864 mRNA_2496 0.85 -0.9
290,392 - 10864 mRNA_2496 0.87 -1.1
290,455 + 10864 mRNA_2496 0.89 2.3
290,495 - -0.7
290,536 - -0.9
290,539 - -0.7
290,554 + -0.5
290,559 + -1.7
290,562 + 1.0
290,562 + 0.5
290,593 + 2.2
290,612 + 1.0
290,634 + 2.1
290,702 + -0.7
290,724 + 1.8
290,751 - 0.1
290,827 - 1.6
290,957 + 0.1
290,994 + 1.4
291,053 - 1.7
291,085 + 0.9
291,127 - 2.3
291,472 - 10865 mRNA_2497 0.13 0.2
291,495 + 10865 mRNA_2497 0.14 0.0