Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2468

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2468: 10836 - HMMPfam-Protein of unknown function (DUF3605)-PF12239, at 219439 to 220603 10836 mRNA_2469: 10837 - K12479 VPS45 vacuolar protein sorting-associated protein 45, at 220878 to 223726 10837

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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218,456 + 0.0
218,482 - -1.6
218,506 + -1.2
218,507 - -2.6
218,561 + 0.3
218,561 + -0.3
218,570 + -0.7
218,573 + 0.1
218,594 + 0.2
218,609 - 1.1
218,642 - 0.2
218,651 + -0.9
218,657 - -0.8
218,659 + -0.5
218,671 - -0.2
218,677 - 0.2
218,747 - -1.3
218,766 - 0.3
218,788 - 0.3
218,794 - -1.7
218,802 + -0.1
218,817 - 0.1
218,830 + 0.1
218,924 - 2.1
218,926 + 2.8
218,947 - -0.9
218,951 - -0.5
218,952 - 1.0
218,954 - 0.8
218,961 - 1.6
218,962 - -1.9
218,969 + -0.8
219,087 - 0.6
219,229 - 1.7
219,239 - -1.4
219,260 + -1.5
219,260 + -0.8
219,260 + 0.2
219,264 - 0.4
219,369 + 1.0
219,373 + 0.6
219,387 - -0.1
219,393 + -1.1
219,402 + 1.3
219,946 - 10836 mRNA_2468 0.44 -0.6
220,084 + 10836 mRNA_2468 0.55 -0.0
220,375 - 10836 mRNA_2468 0.80 1.1
220,391 - 10836 mRNA_2468 0.82 0.7
220,498 - -0.1
220,539 + -0.3
220,608 - 0.8
220,650 - -0.8
220,651 + -0.2
220,823 + -1.1
220,995 - 0.3