Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2453

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2452: 10820 - HMMPfam-Ribonuclease H2 non-catalytic subunit (Ylr154p-like)-PF08615, at 165209 to 166286 10820 mRNA_2453: 10821 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 166755 to 168701 10821 mRNA_2454: 10822 - K12823 DDX5, DBP2 ATP-dependent RNA helicase DDX5/DBP2, at 169687 to 172594 10822

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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165,847 - 10820 mRNA_2452 0.59 1.7
165,917 - 10820 mRNA_2452 0.66 0.1
166,296 - -0.6
166,605 - -1.8
167,048 + 10821 mRNA_2453 0.15 0.2
167,311 - 10821 mRNA_2453 0.29 1.2
167,484 + 10821 mRNA_2453 0.37 -3.5
167,635 + 10821 mRNA_2453 0.45 -0.0
167,744 + 10821 mRNA_2453 0.51 -0.6
167,785 + 10821 mRNA_2453 0.53 -0.2
167,899 - 10821 mRNA_2453 0.59 -0.5
168,065 - 10821 mRNA_2453 0.67 2.7
168,367 - 10821 mRNA_2453 0.83 -0.5
168,389 + 10821 mRNA_2453 0.84 0.0
168,524 + 0.8
168,613 - 0.0
168,634 - 1.2
168,649 - -0.1
168,659 - -0.4
168,737 + 0.5
168,756 - 0.2
168,778 - -1.0
168,790 + -1.3
168,792 + 0.3
168,794 + -0.4
168,797 + 0.4
168,797 + -2.4
168,802 - -2.0
168,804 + -0.4
168,808 - 1.6
168,818 + 0.8
168,819 - -1.2
168,821 - -2.5
168,822 + -0.7
168,824 + -0.8
168,824 + 0.3
168,840 + -0.3
168,846 + -0.1
168,861 - -0.0
168,883 - 2.1
168,912 - -0.6
168,921 + -0.1
168,925 - -0.3
168,944 + -1.3
168,949 + 0.8
168,953 + -0.4
168,953 - -0.3
168,965 - -0.4
168,965 + 0.9
168,967 + -0.5
168,973 - 0.3
169,002 - 0.2
169,006 - 0.5
169,009 - -0.5
169,010 - -0.5
169,012 + -0.6
169,013 - -1.0
169,019 + -0.0
169,023 - -0.3
169,025 - 0.5
169,025 - 0.0
169,026 + 0.0
169,027 - -0.1
169,034 + -0.4
169,036 - 1.3
169,041 - -1.7
169,041 - -1.1
169,046 + 0.3
169,048 - -0.6
169,048 - 0.0
169,050 - -0.1
169,053 + -0.2
169,053 + 1.2
169,057 - 1.4
169,059 + -1.0
169,089 - 2.1
169,090 - -0.3
169,097 - -0.1
169,101 + -0.7
169,101 + 0.3
169,102 + -1.0
169,103 + -1.1
169,105 + 0.2
169,106 + -0.2
169,107 + 1.6
169,107 - -0.9
169,108 + -0.7
169,110 - -0.6
169,119 - 0.7
169,124 + -0.1
169,138 + 0.3
169,155 - -0.4
169,172 - 1.5
169,178 + 1.2
169,179 - -0.7
169,184 - 0.0
169,185 + -2.6
169,198 + 0.2
169,211 - 0.3
169,291 - 0.4
169,300 + -0.0
169,450 + -0.4
169,683 + 1.6