Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2424

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2423: 10791 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 86088 to 89055 10791 mRNA_2424: 10792 - KOG1605 TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation), at 89637 to 90963 10792 mRNA_2425: 10793 - K02732 PSMB1 20S proteasome subunit beta 6, at 91083 to 92591 10793

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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88,681 - 10791 mRNA_2423 0.87 -0.8
88,830 + 0.2
88,997 - -0.1
89,118 - -0.4
89,132 - 1.0
89,162 - 1.7
89,172 + -0.0
89,173 + -0.7
89,183 + 0.5
89,429 + -1.4
89,593 + 0.3
89,614 - 0.1
90,049 - 10792 mRNA_2424 0.31 1.6
90,346 - 10792 mRNA_2424 0.53 -0.3
90,434 + 10792 mRNA_2424 0.60 0.8
90,461 - 10792 mRNA_2424 0.62 -0.2
90,551 - 10792 mRNA_2424 0.69 -0.7