Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2314

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2313: 10681 - K13343 PEX14 peroxin-14, at 584223 to 585492 10681 mRNA_2314: 10682 - BLAST Valine--tRNA ligase [Rhizoctonia solani], at 585676 to 588935 10682 mRNA_2315: 10683 - SUPERFAMILY--SSF160369, at 589518 to 590435 10683

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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585,569 - -1.0
585,573 - 0.2
585,577 - 0.5
585,578 - 0.4
585,591 - -0.3
585,591 + -0.3
585,592 + 0.4
585,653 - -0.8
585,653 - 1.6
585,662 - -1.0
585,668 - 0.3
585,774 + 0.3
585,783 + 0.6
585,853 - 2.0
585,934 + 0.3
585,948 - 0.8
586,508 + 10682 mRNA_2314 0.26 -0.2
586,510 - 10682 mRNA_2314 0.26 1.0
586,650 + 10682 mRNA_2314 0.30 0.3
586,789 - 10682 mRNA_2314 0.34 1.0
586,981 + 10682 mRNA_2314 0.40 3.6
587,101 - 10682 mRNA_2314 0.44 0.6
587,147 + 10682 mRNA_2314 0.45 0.0
587,278 + 10682 mRNA_2314 0.49 0.3
587,356 - 10682 mRNA_2314 0.52 -0.3
587,423 - 10682 mRNA_2314 0.54 0.5
587,696 - 10682 mRNA_2314 0.62 -0.6
587,712 + 10682 mRNA_2314 0.62 0.2
587,817 - 10682 mRNA_2314 0.66 -1.2
587,843 + 10682 mRNA_2314 0.66 0.6
587,899 + 10682 mRNA_2314 0.68 1.2
588,150 - 10682 mRNA_2314 0.76 -1.1
588,335 - 10682 mRNA_2314 0.82 -0.3
588,555 - 10682 mRNA_2314 0.88 -0.4
588,698 - -1.3
588,858 + -2.1
589,011 - -0.7
589,026 + 0.7
589,036 + 0.4
589,037 + -0.1
589,042 + 1.0
589,165 - 1.3
589,189 + 1.4
589,340 + -0.2
589,482 + -2.2