Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2308

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2307: 10675 - HMMPfam-Mitochondrial ATPase inhibitor, IATP-PF04568,SUPERFAMILY--SSF64602, at 572291 to 573066 10675 mRNA_2308: 10676 - ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300, at 573284 to 575347 10676 mRNA_2309: 10677 - K10703 PHS1, PAS2 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase, at 575716 to 577026 10677

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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572,291 + 0.4
572,363 + 1.3
572,416 + 10675 mRNA_2307 0.16 1.6
572,417 + 10675 mRNA_2307 0.16 1.4
572,421 - 10675 mRNA_2307 0.17 -1.0
572,423 - 10675 mRNA_2307 0.17 0.9
572,431 - 10675 mRNA_2307 0.18 -1.6
572,441 + 10675 mRNA_2307 0.19 -0.5
572,449 + 10675 mRNA_2307 0.20 -2.5
572,469 + 10675 mRNA_2307 0.23 -2.5
572,666 - 10675 mRNA_2307 0.48 0.3
572,800 + 10675 mRNA_2307 0.66 -0.2
572,979 - 10675 mRNA_2307 0.89 -1.1
573,011 - -0.1
573,132 + -1.8
573,138 - 0.3
573,138 + -0.6
573,178 + 0.9
573,180 - -0.9
573,181 + -0.8
573,183 + 1.0
573,189 + 2.0
573,189 + -1.9
573,192 - -1.1
573,196 - -0.1
573,198 - -0.6
573,198 + -0.6
573,199 + -0.3
573,203 - 1.1
573,206 + -0.7
573,212 + -0.0
573,214 - 0.2
573,220 - -1.7
573,230 + 0.4
573,233 + 0.7
573,236 - -0.3
573,236 + -1.7
573,248 - 1.2
573,338 - -0.5
573,346 - 0.4
573,363 + 0.9
573,373 - -1.3
573,376 + -1.3
573,487 - 0.7
573,496 - 10676 mRNA_2308 0.10 -0.5
573,501 - 10676 mRNA_2308 0.11 1.0
573,506 - 10676 mRNA_2308 0.11 -1.8
573,519 + 10676 mRNA_2308 0.11 0.0
573,600 - 10676 mRNA_2308 0.15 -3.7
573,665 - 10676 mRNA_2308 0.18 1.1
574,277 - 10676 mRNA_2308 0.48 -1.5
574,332 - 10676 mRNA_2308 0.51 0.2
574,350 - 10676 mRNA_2308 0.52 0.9
574,364 + 10676 mRNA_2308 0.52 0.5
574,653 - 10676 mRNA_2308 0.66 0.0
575,206 + 1.1
575,327 - -1.6
575,368 - -0.6
575,619 + -1.6
575,652 + -0.2
575,789 - 0.7