Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2291

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2291: 10659 - HMMPfam-von Willebrand factor type A domain-PF13519,ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300, at 540927 to 542780 10659 mRNA_2292: 10660 - K01669 phrB deoxyribodipyrimidine photo-lyase, at 543301 to 545980 10660

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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540,336 - -1.0
540,624 + -0.4
540,630 + 0.2
540,657 + 0.2
540,764 - 0.4
540,791 - -1.3
540,812 + -0.4
540,820 + -1.2
540,829 + 0.1
540,925 - 0.3
540,947 + 0.3
540,952 + -0.4
540,962 + -0.2
540,965 + 0.9
541,369 + 10659 mRNA_2291 0.24 0.5
541,675 - 10659 mRNA_2291 0.40 2.7
541,952 - 10659 mRNA_2291 0.55 -0.4
542,671 + 0.4
542,699 + -3.3
542,811 + -0.7
542,816 - -0.4
542,823 - -1.8
542,829 + 0.4
542,829 + -0.6
542,982 - -0.1
543,041 + -1.6
543,189 - -0.2
543,199 + 0.0
543,307 - -0.4
543,310 - 1.4
543,351 + 0.0
543,414 + 1.7
543,507 + -0.7
543,625 + 10660 mRNA_2292 0.12 -0.5
543,667 + 10660 mRNA_2292 0.14 0.5