Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2281

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2280: 10648 - HMMPfam-B-block binding subunit of TFIIIC-PF04182, at 511379 to 518850 10648 mRNA_2281: 10649 - K12190 VPS36, EAP45 ESCRT-II complex subunit VPS36, at 519083 to 521393 10649 mRNA_2282: 10650 - HMMPfam-Conidiation protein 6-PF10346, at 522236 to 522967 10650

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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518,852 + -1.1
518,966 + 0.1
518,985 - -0.3
518,998 - -0.1
519,004 - -2.4
519,027 - -1.0
519,087 + -1.7
519,376 - 10649 mRNA_2281 0.13 0.0
520,061 + 10649 mRNA_2281 0.42 -1.4
520,370 + 10649 mRNA_2281 0.56 -0.1
521,269 + 0.0
521,291 + -1.3
521,326 + 0.0
521,403 - 1.0
521,410 + 0.7
521,561 - 2.3
521,564 - -0.0
521,567 - -0.4
521,568 + -0.8
521,568 + -0.6
521,569 - -0.1
521,569 + -0.7
521,603 - -0.4
521,621 - -0.9
521,627 - -0.3
521,643 + -0.4
521,655 - -0.6
521,657 + -0.4
521,701 + 0.4
521,703 - -0.2
521,713 + -0.6
521,720 - -0.2
521,865 + 1.0
521,914 + -0.8
522,015 + 0.4
522,045 + -0.2