Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2258

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2257: 10625 - K12626 LSM7 U6 snRNA-associated Sm-like protein LSm7, at 475904 to 476538 10625 mRNA_2258: 10626 - K04627 STE3 pheromone a factor receptor, at 476602 to 477940 10626 mRNA_2259: 10627 - K02933 RP-L6, MRPL6, rplF large subunit ribosomal protein L6, at 478240 to 479053 10627

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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475,655 - -0.8
475,661 + -0.2
475,734 + -0.1
475,743 - 1.9
475,746 + -0.2
475,748 - 2.5
475,749 - 0.4
475,862 + -0.6
476,617 - 0.8
476,630 + -0.5
476,741 - 10626 mRNA_2258 0.10 -0.1
476,897 - 10626 mRNA_2258 0.22 -0.4
476,907 + 10626 mRNA_2258 0.23 0.5
477,034 + 10626 mRNA_2258 0.32 -0.2
477,207 + 10626 mRNA_2258 0.45 0.2
477,279 + 10626 mRNA_2258 0.51 -0.1
477,300 + 10626 mRNA_2258 0.52 0.9
477,327 + 10626 mRNA_2258 0.54 -0.1
477,469 + 10626 mRNA_2258 0.65 0.2
477,610 + 10626 mRNA_2258 0.75 -3.1
477,619 + 10626 mRNA_2258 0.76 0.3
477,620 + 10626 mRNA_2258 0.76 -1.3
477,763 + 10626 mRNA_2258 0.87 -0.1
477,882 + -0.7
477,901 + 0.3
477,906 - 0.4
477,985 - 0.3
477,989 - 2.6
478,023 - 1.0
478,052 - 0.6
478,054 - -1.5
478,055 - 0.4
478,057 - -3.0
478,064 - -1.9
478,067 + 1.0
478,067 - -0.7
478,069 - 0.1
478,075 - -1.1
478,096 - -0.4
478,099 - 1.4
478,100 - -2.0
478,104 - 0.6
478,105 - -0.1
478,105 + 1.9
478,109 + -0.7
478,115 + -0.1
478,117 + -0.3
478,121 + -0.1
478,122 + -1.0
478,122 + 0.8
478,126 - 0.8
478,128 - -0.1
478,279 - 0.5