Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2216

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2215: 10583 - K01737 queD, ptpS, PTS 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase, at 379007 to 379807 10583 mRNA_2216: 10584 - BLAST Oligosaccharide translocation protein RFT1 [Termitomy..., at 380175 to 381550 10584 mRNA_2217: 10585 - KOG2199 Signal transducing adaptor protein STAM/STAM2, at 382345 to 384541 10585

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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379,279 - 10583 mRNA_2215 0.34 2.9
379,571 + 10583 mRNA_2215 0.70 -2.2
379,702 - 10583 mRNA_2215 0.87 -0.1
379,815 - 0.0
379,834 - 1.6
379,838 - -0.3
380,007 + -0.2
380,024 - 0.3
380,116 - 0.6
380,116 + 1.9
380,139 + -1.7
380,290 - -0.1
380,296 - 0.4
380,586 + 10584 mRNA_2216 0.30 -0.4
380,731 - 10584 mRNA_2216 0.40 0.5
381,142 - 10584 mRNA_2216 0.70 -0.2
381,328 + 10584 mRNA_2216 0.84 -0.8
381,456 - -1.2
381,464 + -0.7
381,468 + 3.0
381,472 - -0.1
381,472 + -2.2
381,474 + -0.5
381,482 + -1.2
381,559 - -0.8
381,586 - -2.0
381,593 - 0.5
381,595 - 2.3
381,604 + -1.6
381,612 - -1.7
381,613 + 0.6
381,614 + -0.1
381,614 + -0.2
381,618 + -0.2
381,620 + -0.0
381,624 - -2.0
381,626 + -0.0
381,626 - 1.4
381,628 + 0.3
381,628 + -0.1
381,700 + 0.1
381,703 - 0.7
381,709 - -1.4
381,709 - -0.9
381,711 + 1.5
381,716 + 1.4
381,723 + 2.6
381,725 - 1.1
381,728 + 1.6
381,729 + -0.1
381,737 - -0.6
381,740 + 0.2
381,746 + 0.0
381,746 + 0.8
381,779 + -1.5
381,783 + 0.1
381,906 + 0.1
382,005 - -1.3
382,035 - 1.2
382,430 - -0.9
382,500 - -1.4