Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2211

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2210: 10578 - K20407 MIOS, MIO WD repeat-containing protein mio, at 363303 to 367211 10578 mRNA_2211: 10579 - K09486 HYOU1 hypoxia up-regulated 1, at 367556 to 370614 10579 mRNA_2212: 10580 - K04441 P38 p38 MAP kinase, at 371280 to 373458 10580

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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366,870 + 0.3
366,988 - -0.4
367,265 + -0.2
367,297 - -1.5
367,339 + 0.3
367,360 + 0.8
367,447 - 1.7
367,477 + -1.5
367,477 + -1.5
367,477 + 0.2
368,933 - 10579 mRNA_2211 0.45 1.3
370,233 + 10579 mRNA_2211 0.88 -2.0
370,549 + 1.4
370,662 - 1.6
370,663 - -3.2
370,666 - 1.5
370,672 - -0.2
370,693 + 0.1
370,739 - 1.0
370,739 - -1.3
370,791 - 1.0
370,813 + 0.9
370,815 - -0.4
370,816 - 0.3
370,816 + -0.7
370,824 - -1.5
370,837 - -0.3
370,840 - 1.3
370,845 - -1.2
370,849 + 0.3
370,859 - -0.2
370,859 - -1.7
370,861 - 1.5
370,862 + -1.1
370,863 + 0.0
370,864 + 1.8
370,864 + 1.5
370,866 - 2.2
370,870 + 0.8
370,891 - 0.8
370,892 + -0.1
370,896 + 1.2
370,896 - 0.0
370,899 + 0.1
370,923 + 1.4
370,931 - -0.1
370,938 + -0.4
370,956 - 1.0
370,973 + 2.2
370,974 - 0.0
370,974 + 1.4
371,070 - -0.5
371,073 + 0.3
371,086 - -0.0
371,087 - -0.3
371,088 - 2.0
371,089 + 0.7
371,093 + -0.2
371,093 - 1.4
371,095 + 1.0
371,101 + -0.7
371,103 - -0.4
371,104 + -0.9
371,111 - -0.4
371,118 + 0.3
371,120 + -0.3
371,127 + -3.1
371,127 + -1.1
371,127 + 1.5
371,560 + 10580 mRNA_2212 0.13 -0.5
371,561 + 10580 mRNA_2212 0.13 -0.8