Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2206

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2205: 10573 - KOG0381 HMG box-containing protein, at 349439 to 350135 10573 mRNA_2206: 10574 - K20465 OSBPL9_10_11, ORP9_10_11 oxysterol-binding protein-related protein 9/10/11, at 350841 to 352829 10574 mRNA_2207: 10575 - K08284 MID1 calcium channel MID1, at 353107 to 355052 10575

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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350,216 - -1.9
350,352 - -2.6
350,362 + -1.2
350,378 - -2.4
350,381 - -0.2
350,394 + -1.7
350,395 + 0.7
350,395 - 1.8
350,415 + 1.4
350,426 - 1.1
350,433 - -1.2
350,518 - -1.0
350,521 + 0.4
350,524 - 0.8
350,536 - -0.1
350,539 - -0.2
350,540 - -0.8
350,541 + -0.8
350,543 - 0.1
350,547 + 1.5
350,548 - -0.1
350,549 - -0.1
350,555 - -0.9
350,555 + 0.8
350,556 + -0.8
350,556 - 0.2
350,560 - -0.8
350,561 + -1.3
350,565 - -1.3
350,568 - -0.6
350,572 - -1.1
350,572 - -0.1
350,573 + 0.3
350,576 - -0.2
350,578 - -0.4
350,578 - -1.2
350,580 - 0.4
350,581 + 0.9
350,584 - 0.2
350,587 + 1.4
350,587 + -0.0
350,587 + 0.6
350,587 + 1.6
350,587 + 0.8
350,587 + -1.0
350,590 + 1.9
350,594 - -0.4
350,759 - -0.4
350,764 + -0.2
350,767 - 0.1
350,771 - -0.3
350,772 - 0.2
350,794 - 0.1
350,796 - 0.2
350,799 + 0.7
350,802 + -0.8
350,804 - -1.7
350,926 - 1.9
350,928 - 0.8
350,938 - 1.6
350,946 + 1.4
350,946 - -2.2
350,952 - 0.9
350,965 - -0.6
350,967 - -1.8
351,085 - 10574 mRNA_2206 0.12 2.3
351,087 - 10574 mRNA_2206 0.12 0.2
351,106 - 10574 mRNA_2206 0.13 0.4
351,235 + 10574 mRNA_2206 0.20 -1.1
351,261 - 10574 mRNA_2206 0.21 -0.4
351,396 - 10574 mRNA_2206 0.28 0.2
351,678 + 10574 mRNA_2206 0.42 0.7
352,263 - 10574 mRNA_2206 0.71 -0.5
352,284 + 10574 mRNA_2206 0.73 0.3
352,440 + 10574 mRNA_2206 0.80 -0.5
352,565 - 10574 mRNA_2206 0.87 -0.4
352,566 + 10574 mRNA_2206 0.87 -1.3
352,571 + 10574 mRNA_2206 0.87 0.5
352,818 + -0.3
352,851 + -1.1
353,002 + -0.8
353,002 + 1.1
353,025 - -1.3
353,037 - -0.6
353,046 + -0.4
353,065 + -0.1
353,325 + 10575 mRNA_2207 0.11 1.0
353,328 + 10575 mRNA_2207 0.11 0.7
353,346 - 10575 mRNA_2207 0.12 -1.0
353,599 - 10575 mRNA_2207 0.25 -0.1
353,755 + 10575 mRNA_2207 0.33 -3.0
353,755 - 10575 mRNA_2207 0.33 -0.3