Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2204

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2203: 10571 - K13339 PEX6, PXAAA1 peroxin-6, at 343203 to 347570 10571 mRNA_2204: 10572 - K03786 aroQ, qutE 3-dehydroquinate dehydratase II, at 347838 to 348942 10572 mRNA_2205: 10573 - KOG0381 HMG box-containing protein, at 349439 to 350135 10573

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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347,602 - 0.5
347,606 - 0.6
347,619 + -0.4
347,619 - -0.9
347,624 + 1.4
347,624 - -2.5
347,630 - -0.2
347,685 - 0.7
347,701 - -0.8
347,705 + 0.1
347,743 - -0.4
347,744 + -0.3
347,754 - -1.0
347,759 + -0.1
347,759 + -0.1
347,761 - -0.2
347,779 - 2.3
347,800 + -1.3
347,879 - -0.8
347,892 - -0.8
347,895 + -0.7
348,042 + 10572 mRNA_2204 0.18 -0.1
348,166 + 10572 mRNA_2204 0.30 -2.2
348,193 - 10572 mRNA_2204 0.32 -0.0
348,195 - 10572 mRNA_2204 0.32 0.6
349,458 - 0.6
349,479 - 1.0
349,489 - -0.7
349,639 - 10573 mRNA_2205 0.29 0.6
349,759 - 10573 mRNA_2205 0.46 2.1