Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2175

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2174: 10542 - K14009 BCAP31, BAP31 B-cell receptor-associated protein 31, at 254027 to 255180 10542 mRNA_2175: 10543 - HMMPfam-Mus7/MMS22 family-PF09462, at 255474 to 261372 10543 mRNA_2176: 10544 - Hypothetical Protein, at 262297 to 263218 10544

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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254,503 - 10542 mRNA_2174 0.41 -0.8
254,530 + 10542 mRNA_2174 0.44 1.1
254,560 - 10542 mRNA_2174 0.46 0.4
254,566 - 10542 mRNA_2174 0.47 -0.7
254,705 + 10542 mRNA_2174 0.59 0.2
254,779 - 10542 mRNA_2174 0.65 1.5
254,932 + 10542 mRNA_2174 0.78 2.8
254,933 - 10542 mRNA_2174 0.79 -0.3
254,938 - 10542 mRNA_2174 0.79 2.9
254,946 + 10542 mRNA_2174 0.80 -0.4
254,955 + 10542 mRNA_2174 0.80 0.7
255,100 - 0.7
255,208 + 0.5
255,246 - 1.5
255,251 + 0.4
255,281 - -0.3
255,415 - 0.7
255,845 - 1.4
256,246 - 10543 mRNA_2175 0.13 -0.2
256,612 + 10543 mRNA_2175 0.19 0.9
260,970 - -0.1
260,971 - -0.9
261,093 + 0.2
261,125 + -0.6
261,417 - 0.1
261,423 - -0.1
261,443 - -0.8
261,458 + 0.8
261,554 - 1.4
261,568 - -0.4
261,588 - -2.2
261,618 + -0.5
261,711 - -2.3
261,879 - 2.0
261,896 + -1.5
262,162 + -1.1
262,312 + 2.4