Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2152

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2151: 10519 - K03348 APC1 anaphase-promoting complex subunit 1, at 192914 to 199163 10519 mRNA_2152: 10520 - KOG2887 Membrane protein involved in ER to Golgi transport, at 199277 to 200467 10520 mRNA_2153: 10521 - K14003 PREB, SEC12 prolactin regulatory element-binding protein, at 200588 to 202509 10521

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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198,918 + 1.0
199,186 + 1.5
199,189 - -0.0
199,296 + -1.1
199,620 + 10520 mRNA_2152 0.29 1.7
199,625 + 10520 mRNA_2152 0.29 1.0
199,780 + 10520 mRNA_2152 0.42 -0.1
199,793 - 10520 mRNA_2152 0.43 -2.1
199,914 - 10520 mRNA_2152 0.53 -0.7
200,040 - 10520 mRNA_2152 0.64 0.6
200,047 + 10520 mRNA_2152 0.65 -0.3
200,049 + 10520 mRNA_2152 0.65 -1.6
200,223 - 10520 mRNA_2152 0.79 0.6
200,494 - 0.2
200,502 - -0.0
200,502 - 0.4