Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2132

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2131: 10499 - K09580 PDIA1, P4HB protein disulfide-isomerase A1, at 141323 to 143619 10499 mRNA_2132: 10500 - Hypothetical Protein, at 144026 to 145888 10500 mRNA_2133: 10501 - ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,ProSiteProfiles-Zinc finger RanBP2 type profile.-PS50199,SMART-Zinc finger domain-SM00547,SUPERFAMILY--SSF90209, at 146345 to 148532 10501

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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143,345 - 10499 mRNA_2131 0.88 2.9
143,404 - 0.2
143,629 + 0.5
143,660 - 0.5
143,682 + -0.2
143,690 + -0.3
143,754 - -0.1
143,816 - 0.4
143,824 - 0.6
143,825 + 0.4
143,835 - 1.7
143,843 + 1.1
143,844 + 1.1
143,916 - -0.1
143,961 - 0.7
143,966 + 0.0
144,074 - 0.8
144,099 - 2.1
144,099 + 1.3
144,105 - -0.9
144,112 - -0.1
144,571 - 10500 mRNA_2132 0.29 -0.5
145,191 + 10500 mRNA_2132 0.63 0.2
145,193 - 10500 mRNA_2132 0.63 -0.3
145,269 - 10500 mRNA_2132 0.67 -2.4
145,280 + 10500 mRNA_2132 0.67 -0.1
145,463 - 10500 mRNA_2132 0.77 -0.0
146,535 - -0.6