Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2115

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2114: 10482 - K10768 ALKBH6 alkylated DNA repair protein alkB homolog 6, at 105978 to 107393 10482 mRNA_2115: 10483 - BLAST integral membrane protein [Stemphylium lycopersici], at 107556 to 109708 10483 mRNA_2116: 10484 - K01184 E3.2.1.15 polygalacturonase, at 110471 to 111882 10484

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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106,645 + 10482 mRNA_2114 0.47 0.0
106,656 - 10482 mRNA_2114 0.48 0.1
106,725 + 10482 mRNA_2114 0.53 -2.0
106,810 + 10482 mRNA_2114 0.59 0.6
106,969 + 10482 mRNA_2114 0.70 1.1
106,972 + 10482 mRNA_2114 0.70 -0.5
107,095 - 10482 mRNA_2114 0.79 0.5
107,103 - 10482 mRNA_2114 0.79 -0.4
107,117 + 10482 mRNA_2114 0.80 0.1
107,304 + 0.9
107,421 - 0.2
107,423 + 0.8
107,423 + 1.8
107,436 + 2.2
107,438 - 1.0
107,444 + -1.1
107,490 - 1.9
107,562 - -0.4
107,577 - 0.3
107,580 - -0.4
107,591 - -0.5
107,627 + 1.1
107,992 - 10483 mRNA_2115 0.20 -0.6
108,029 + 10483 mRNA_2115 0.22 0.0
108,040 + 10483 mRNA_2115 0.22 0.5
108,082 + 10483 mRNA_2115 0.24 0.4
108,157 - 10483 mRNA_2115 0.28 1.2
108,176 - 10483 mRNA_2115 0.29 -0.1
108,208 - 10483 mRNA_2115 0.30 0.7
108,314 + 10483 mRNA_2115 0.35 0.1
108,581 + 10483 mRNA_2115 0.48 0.9
108,615 + 10483 mRNA_2115 0.49 -2.1
108,674 - 10483 mRNA_2115 0.52 1.2
108,805 + 10483 mRNA_2115 0.58 0.6
108,856 - 10483 mRNA_2115 0.60 0.0
108,862 + 10483 mRNA_2115 0.61 -0.7
109,303 + 10483 mRNA_2115 0.81 -1.5
109,350 - 10483 mRNA_2115 0.83 0.1
109,351 + 10483 mRNA_2115 0.83 1.4
109,374 - 10483 mRNA_2115 0.84 1.8
109,374 - 10483 mRNA_2115 0.84 1.6
109,386 - 10483 mRNA_2115 0.85 0.6
109,394 - 10483 mRNA_2115 0.85 0.1
109,434 + 10483 mRNA_2115 0.87 -1.8
109,492 - 10483 mRNA_2115 0.90 0.0
109,611 + -0.7
109,760 + -0.4
109,901 - 0.3
109,911 - -0.2
109,911 - 0.1
109,974 + -0.4
110,172 + 0.9
110,241 - 2.0
110,480 + 2.7
110,580 + -0.1
110,676 + 10484 mRNA_2116 0.15 -0.3