Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2086

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2085: 10453 - BLAST nucleotide-diphospho-sugar transferase [Sanghuangporu..., at 38392 to 39762 10453 mRNA_2086: 10454 - Hypothetical Protein, at 40220 to 41311 10454 mRNA_2087: 10455 - K19792 FET4 low-affinity ferrous iron transport protein, at 41484 to 43178 10455

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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39,228 - 10453 mRNA_2085 0.61 0.6
39,379 - 10453 mRNA_2085 0.72 -1.0
39,675 - 1.6
40,069 + 0.4
40,077 - -0.7
40,209 - 1.7
40,228 + 0.1
40,312 + -2.7
40,315 - 1.5
40,695 + 10454 mRNA_2086 0.43 0.4
40,700 - 10454 mRNA_2086 0.44 0.6
40,718 - 10454 mRNA_2086 0.46 0.5
40,718 + 10454 mRNA_2086 0.46 -0.1
40,810 + 10454 mRNA_2086 0.54 -2.2
40,839 + 10454 mRNA_2086 0.57 1.9
40,840 + 10454 mRNA_2086 0.57 -0.6
40,844 - 10454 mRNA_2086 0.57 0.8
40,853 - 10454 mRNA_2086 0.58 0.2
40,997 + 10454 mRNA_2086 0.71 0.1
40,999 + 10454 mRNA_2086 0.71 -0.0
41,003 - 10454 mRNA_2086 0.72 -0.4
41,014 - 10454 mRNA_2086 0.73 -1.7
41,041 + 10454 mRNA_2086 0.75 0.3
41,045 - 10454 mRNA_2086 0.76 0.0
41,055 - 10454 mRNA_2086 0.76 -0.2
41,136 - 10454 mRNA_2086 0.84 -0.4
41,145 - 10454 mRNA_2086 0.85 -0.2
41,173 + 10454 mRNA_2086 0.87 -1.4
41,360 - 1.4
42,170 + 10455 mRNA_2087 0.40 0.7