Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2084

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2083: 10451 - K06276 PDPK1 3-phosphoinositide dependent protein kinase-1, at 30266 to 34170 10451 mRNA_2084: 10452 - KOG0254 Predicted transporter (major facilitator superfamily), at 34690 to 37198 10452

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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33,816 + -0.2
33,833 + 1.4
33,961 + -1.5
33,964 - -2.5
33,973 + 0.6
34,091 - -1.4
34,118 + -0.2
34,215 - 0.2
34,266 - 0.4
34,369 + 0.3
34,692 - -0.6
34,980 + 10452 mRNA_2084 0.12 -0.1
35,015 + 10452 mRNA_2084 0.13 0.3
35,019 - 10452 mRNA_2084 0.13 1.2
35,150 + 10452 mRNA_2084 0.18 1.6
35,258 - 10452 mRNA_2084 0.23 0.5
35,390 - 10452 mRNA_2084 0.28 0.6
35,754 + 10452 mRNA_2084 0.42 1.3
35,973 - 10452 mRNA_2084 0.51 0.4
35,991 + 10452 mRNA_2084 0.52 0.6
35,991 + 10452 mRNA_2084 0.52 1.0
36,011 - 10452 mRNA_2084 0.53 2.0
36,042 + 10452 mRNA_2084 0.54 -0.3
36,149 + 10452 mRNA_2084 0.58 -1.3
36,182 + 10452 mRNA_2084 0.59 1.6
36,326 + 10452 mRNA_2084 0.65 1.2
36,373 + 10452 mRNA_2084 0.67 -1.4
36,410 + 10452 mRNA_2084 0.69 0.8
36,456 - 10452 mRNA_2084 0.70 0.1
36,559 + 10452 mRNA_2084 0.74 -0.1
37,025 - 0.3
37,197 - -0.1
37,481 - 0.2
37,483 + -0.4
37,492 - -1.1
37,496 + -0.1
37,513 - 0.0
37,569 + -0.8
37,615 + -1.9
37,615 - -1.4
37,631 + -0.2
37,635 - 0.7
37,638 + 0.5
37,639 + 1.1
37,640 - 0.2
37,644 + 0.1
37,830 - 0.4
37,837 + 1.0
37,846 + 1.5
37,923 + 1.9
37,940 + 1.7
37,940 - 1.5
38,103 - -1.5