Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2060

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2059: 10427 - K13509 AGPAT1_2 lysophosphatidate acyltransferase, at 853881 to 854956 10427 mRNA_2060: 10428 - K05824 LYS12 homoisocitrate dehydrogenase, at 855890 to 857453 10428 mRNA_2061: 10429 - HMMPfam-Protein of unknown function (DUF1640)-PF07798, at 857800 to 859276 10429

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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855,054 - 1.2
855,056 + -1.4
855,205 + -1.1
855,465 - -1.7
855,468 + 0.4
855,469 + -1.0
855,639 + 2.6
855,644 - 0.2
855,651 + 1.2
855,754 + -0.1
855,911 - 1.4
855,954 - 0.7
856,079 + 10428 mRNA_2060 0.12 0.9
856,736 - 10428 mRNA_2060 0.54 0.3
856,753 - 10428 mRNA_2060 0.55 0.1
857,044 + 10428 mRNA_2060 0.74 0.9
857,100 - 10428 mRNA_2060 0.77 0.3
857,125 - 10428 mRNA_2060 0.79 0.6
857,222 + 10428 mRNA_2060 0.85 1.5
857,368 - 1.9
857,393 - 1.4
857,528 - 1.2
857,667 - 0.8
857,813 - -0.8
857,815 + 1.0
857,831 + -1.1
858,388 + 10429 mRNA_2061 0.40 -0.1