Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2007

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2006: 10374 - K00380 cysJ sulfite reductase (NADPH) flavoprotein alpha-component, at 724216 to 728973 10374 mRNA_2007: 10375 - K15331 TRMT2B, TRM2 tRNA (uracil-5-)-methyltransferase, at 729212 to 731398 10375 mRNA_2008: 10376 - K02929 RP-L44e, RPL44 large subunit ribosomal protein L44e, at 731652 to 732253 10376

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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728,685 + 0.2
729,222 - -2.2
729,249 + 1.2
729,263 + -0.4
729,315 + -0.1
729,355 - 0.7
729,459 + 10375 mRNA_2007 0.11 1.4
729,763 + 10375 mRNA_2007 0.25 -1.4
729,888 - 10375 mRNA_2007 0.31 1.6
730,122 - 10375 mRNA_2007 0.42 -0.4
730,181 + 10375 mRNA_2007 0.44 0.1
730,322 + 10375 mRNA_2007 0.51 1.4
730,323 + 10375 mRNA_2007 0.51 0.2
730,663 + 10375 mRNA_2007 0.66 -0.8
730,898 + 10375 mRNA_2007 0.77 2.6
731,197 + -0.6
731,252 - 0.2
731,360 + 1.0
731,361 - -0.9
731,404 - 0.2
731,491 - -0.9
731,505 - 1.6
731,515 + -2.2
731,533 + -1.5