Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1945

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1944: 10312 - BLAST Respiratory supercomplex factor 2, mitochondrial [Cla..., at 572594 to 573767 10312 mRNA_1945: 10313 - Hypothetical Protein, at 574351 to 575148 10313 mRNA_1946: 10314 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 575124 to 577080 10314

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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573,437 + 10312 mRNA_1944 0.72 0.1
573,707 - -1.0
573,716 + 0.4
573,743 - -0.3
573,794 - -1.4
573,832 + 0.1
573,837 + -0.8
573,841 - 0.0
573,846 - 0.1
573,851 + -0.7
573,852 - -0.1
573,855 - 2.1
573,868 - 0.6
573,869 - -1.0
573,870 - 2.0
573,870 + -0.3
573,876 - -0.3
573,882 - -0.5
573,884 + -0.1
573,884 + -1.5
573,890 - 0.1
573,897 + 2.1
573,897 + -1.5
573,903 + -0.1
573,905 + 0.1
573,916 - -1.3
573,917 + -0.9
573,932 - -0.8
573,948 + -1.8
573,968 - 0.0
573,970 - 0.1
574,033 + -1.0
574,034 - -1.4
574,139 - 3.4
574,157 - -0.6
574,163 - 0.1
574,169 - -1.2
574,169 - 0.1
574,172 + 0.4
574,173 + -0.3
574,175 + -0.1
574,178 - -1.2
574,183 + 0.1
574,191 + 2.0
574,193 + -0.8
574,193 + 0.5
574,289 - -1.6
574,384 + -0.9
574,450 - 10313 mRNA_1945 0.12 -0.3
574,459 + 10313 mRNA_1945 0.14 -0.1
574,470 - 10313 mRNA_1945 0.15 -3.6
574,475 + 10313 mRNA_1945 0.16 -3.3
574,510 + 10313 mRNA_1945 0.20 -2.2
574,572 + 10313 mRNA_1945 0.28 -0.4
574,764 - 10313 mRNA_1945 0.52 -1.2
574,803 + 10313 mRNA_1945 0.57 -1.7
575,060 - 10313 mRNA_1945 0.89 -1.5
575,323 - 10314 mRNA_1946 0.10 -1.1
575,481 + 10314 mRNA_1946 0.18 -1.2
575,652 - 10314 mRNA_1946 0.27 -0.6
575,652 + 10314 mRNA_1946 0.27 -2.0