Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1942

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1941: 10309 - KOG3798 Predicted Zn-dependent hydrolase (beta-lactamase superfamily), at 564207 to 567007 10309 mRNA_1942: 10310 - HMMPfam-PLD-like domain-PF13091,ProSiteProfiles-Phospholipase D phosphodiesterase active site profile.-PS50035,SMART-Phospholipase D. Active site motifs.-SM00155,SUPERFAMILY--SSF56024, at 567440 to 570897 10310 mRNA_1943: 10311 - Hypothetical Protein, at 571138 to 572203 10311

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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566,514 - 10309 mRNA_1941 0.82 -0.6
566,641 - 10309 mRNA_1941 0.87 -2.2
566,650 + 10309 mRNA_1941 0.87 0.3
566,663 - 10309 mRNA_1941 0.88 0.1
566,689 - 10309 mRNA_1941 0.89 1.1
566,882 - -0.4
566,995 + -1.6
567,101 - -1.8
567,109 - 0.2
567,112 + -1.2
567,232 - 1.0
567,253 + 0.6
567,376 - 0.4
567,399 - -1.1
567,510 + 1.3
567,536 + 0.5
567,546 + -0.3
567,547 + -0.2
567,552 - -0.1
567,699 - 0.3
567,702 + -1.0
568,004 - 10310 mRNA_1942 0.16 -1.6
568,465 + 10310 mRNA_1942 0.30 -0.5
568,808 - 10310 mRNA_1942 0.40 0.4
568,809 + 10310 mRNA_1942 0.40 0.3
569,173 + 10310 mRNA_1942 0.50 -0.7
569,194 + 10310 mRNA_1942 0.51 -1.8
569,754 - 10310 mRNA_1942 0.67 3.4
570,017 + 10310 mRNA_1942 0.75 -2.2
570,203 - 10310 mRNA_1942 0.80 2.2
570,702 - 0.5
570,794 - -2.3
570,929 - -0.6
571,211 + -1.5
571,258 + 10311 mRNA_1943 0.11 -1.9
571,348 - 10311 mRNA_1943 0.20 0.3
571,417 - 10311 mRNA_1943 0.26 1.4
571,420 - 10311 mRNA_1943 0.26 0.5
571,492 - 10311 mRNA_1943 0.33 -1.3
571,496 - 10311 mRNA_1943 0.34 0.6
571,499 + 10311 mRNA_1943 0.34 -0.1
571,638 + 10311 mRNA_1943 0.47 1.1
571,785 - 10311 mRNA_1943 0.61 -0.1
571,854 - 10311 mRNA_1943 0.67 -0.3