Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1937

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1936: 10304 - K07424 CYP3A cytochrome P450, family 3, subfamily A, at 551220 to 553834 10304 mRNA_1937: 10305 - K18342 OTUD6 OTU domain-containing protein 6, at 554394 to 556031 10305 mRNA_1938: 10306 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 556583 to 558262 10306

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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553,466 + 10304 mRNA_1936 0.86 -1.5
553,727 - 0.6
553,734 - -0.0
553,865 + 0.5
553,868 + -0.6
553,890 - 1.2
553,893 + 3.1
553,903 + 0.4
553,909 - -0.9
553,916 + -0.4
553,945 - -0.5
553,981 - -0.3
554,011 + 1.4
554,025 + 1.6
554,029 - -1.4
554,038 - 0.1
554,040 + -1.0
554,040 + -0.1
554,046 + 1.0
554,064 + -0.6
554,069 + -0.9
554,074 + -0.9
554,084 + 0.7
554,096 + -0.4
554,105 + 0.2
554,147 - 1.2
554,147 - -1.2
554,149 - -0.4
554,165 - -0.8
554,165 - -0.4
554,165 + -0.9
554,174 - 0.3
554,185 + -2.0
554,326 - 1.0
554,334 - 0.7
554,336 + -0.9
554,349 + -1.6
554,350 + 1.0
554,361 + -1.0
554,367 + -0.7
554,470 + -1.5
554,816 - 10305 mRNA_1937 0.26 -0.7
555,084 - 10305 mRNA_1937 0.42 -1.8
556,233 + 0.2
556,233 - -0.7
556,259 - 0.7
556,395 - -1.3
556,401 - -1.8
556,431 + 0.1
556,535 + -1.0
556,538 + -1.6
556,546 + 0.2
556,691 - -0.2
556,879 - 10306 mRNA_1938 0.18 -0.0
556,948 + 10306 mRNA_1938 0.22 0.8
556,995 + 10306 mRNA_1938 0.25 0.2