Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1912

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1911: 10279 - K14967 BRE2, CPS60 COMPASS component BRE2, at 497993 to 499871 10279 mRNA_1912: 10280 - K04450 ATF2, CREBP1 cyclic AMP-dependent transcription factor ATF-2, at 500203 to 502614 10280 mRNA_1913: 10281 - K04564 SOD2 superoxide dismutase, Fe-Mn family, at 503193 to 504426 10281

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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499,291 + 10279 mRNA_1911 0.69 0.8
499,407 - 10279 mRNA_1911 0.75 -0.7
499,546 - 10279 mRNA_1911 0.83 -0.4
499,684 - 0.7
499,692 - -0.0
499,857 + 0.2
499,859 + 1.2
500,024 + 3.2
500,154 - -0.8
500,305 - 0.8
500,439 + 0.5
501,107 + 10280 mRNA_1912 0.37 0.0
501,345 + 10280 mRNA_1912 0.47 0.0
501,633 + 10280 mRNA_1912 0.59 0.2
501,653 + 10280 mRNA_1912 0.60 1.0
502,205 - 10280 mRNA_1912 0.83 0.3
502,233 + 10280 mRNA_1912 0.84 0.2
502,361 - 10280 mRNA_1912 0.89 0.4
502,364 + 10280 mRNA_1912 0.90 -0.6
502,518 - 0.4
502,530 + -0.5
502,545 + 0.2
502,551 + -0.1
502,627 + -0.7
502,652 + -0.7
502,661 + -1.1
502,664 - 0.5
502,669 - -0.1
502,673 - -0.0
502,678 + -0.3
502,679 + -0.4
502,690 + -1.4
502,705 + -0.2
502,716 + 0.8
502,724 + 0.4
502,826 - -0.5
502,826 + 0.8
502,827 + 0.7
502,834 + -0.3
502,838 + 0.4
502,855 + 0.3
502,859 - 0.4
502,864 + 0.3
502,876 + -0.2
502,968 - 1.1
502,988 - -0.7
502,989 + -1.3
502,989 + -0.3
502,995 - -0.1
503,000 - 1.5
503,002 - -0.1
503,003 - -0.7
503,023 + 0.4
503,024 - -0.5
503,064 + 0.3
503,148 + -0.7
503,149 + 0.1
503,153 - -1.7
503,157 - 0.9
503,157 - -2.5
503,158 + -0.2