Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1855

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1854: 10222 - Hypothetical Protein, at 378651 to 380549 10222 mRNA_1855: 10223 - BLAST secreted protein [Moesziomyces antarcticus], at 380959 to 382150 10223 mRNA_1856: 10224 - K10863 APTX aprataxin, at 382335 to 383661 10224

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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380,053 - 10222 mRNA_1854 0.74 0.9
380,373 - -1.0
380,387 + 0.4
380,398 - 0.1
380,402 - 0.8
380,415 - 0.6
380,575 - -0.2
380,576 + 0.0
380,685 - 0.2
380,703 + -0.6
380,720 - -1.4
380,720 - 2.8
380,723 + 0.6
380,731 + 0.0
380,826 + -0.9
380,841 + 0.3
380,882 + 0.1
380,986 - -0.3
380,992 - 1.1
380,994 + 1.7
381,140 - 10223 mRNA_1855 0.15 0.5
381,144 + 10223 mRNA_1855 0.16 0.4
381,145 - 10223 mRNA_1855 0.16 0.3
381,165 + 10223 mRNA_1855 0.17 -0.8
381,408 + 10223 mRNA_1855 0.38 -0.5
381,436 - 10223 mRNA_1855 0.40 -0.7
381,703 + 10223 mRNA_1855 0.62 -0.8
381,707 + 10223 mRNA_1855 0.63 -0.3
381,710 - 10223 mRNA_1855 0.63 -0.2
381,883 + 10223 mRNA_1855 0.78 -0.8
381,909 + 10223 mRNA_1855 0.80 1.5
382,332 + -1.8
382,440 - -1.2
382,465 - 0.8
382,478 + 10224 mRNA_1856 0.11 -0.5
382,605 + 10224 mRNA_1856 0.20 -0.4